Hb_000853_310

Information

Type transcription factor
Description TF Family: C2C2-GATA
Location Contig853: 232844-233463
Sequence    

Annotation

kegg
ID pop:POPTR_0002s20080g
description POPTRDRAFT_409569; hypothetical protein
nr
ID XP_011041705.1
description PREDICTED: GATA transcription factor 16-like [Populus euphratica]
swissprot
ID Q9FJ10
description GATA transcription factor 16 OS=Arabidopsis thaliana GN=GATA16 PE=2 SV=1
trembl
ID B9GSF0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s20080g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000853_310 0.0 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 16-like [Populus euphratica]
2 Hb_000984_150 0.2040724199 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000622_170 0.2103120641 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF6 [Jatropha curcas]
4 Hb_021409_110 0.2170050095 - - WD-repeat protein, putative [Ricinus communis]
5 Hb_008279_030 0.2233392834 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000915_130 0.223946806 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
7 Hb_005348_150 0.2270957331 - - PREDICTED: actin-100-like [Jatropha curcas]
8 Hb_017098_040 0.2294781928 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
9 Hb_004201_040 0.2321407359 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
10 Hb_008179_030 0.2331983027 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 8 [Jatropha curcas]
11 Hb_033006_020 0.2343590761 - - Aspartate aminotransferase, putative [Ricinus communis]
12 Hb_008511_040 0.2345701208 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
13 Hb_000130_130 0.2349190064 - - hypothetical protein POPTR_0001s40330g [Populus trichocarpa]
14 Hb_000322_030 0.2361704206 - - PREDICTED: uncharacterized protein LOC105637911 [Jatropha curcas]
15 Hb_005144_120 0.237381231 - - PREDICTED: probable glucuronoxylan glucuronosyltransferase IRX7 [Jatropha curcas]
16 Hb_004899_110 0.2397645123 - - PREDICTED: uncharacterized protein LOC105638015 [Jatropha curcas]
17 Hb_012833_010 0.2399309111 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
18 Hb_006634_100 0.2408396406 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000328_010 0.2418176806 - - PREDICTED: QWRF motif-containing protein 8-like [Jatropha curcas]
20 Hb_008053_030 0.2420907056 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000853_310 Hb_000853_310 Hb_000984_150 Hb_000984_150 Hb_000853_310--Hb_000984_150 Hb_000622_170 Hb_000622_170 Hb_000853_310--Hb_000622_170 Hb_021409_110 Hb_021409_110 Hb_000853_310--Hb_021409_110 Hb_008279_030 Hb_008279_030 Hb_000853_310--Hb_008279_030 Hb_000915_130 Hb_000915_130 Hb_000853_310--Hb_000915_130 Hb_005348_150 Hb_005348_150 Hb_000853_310--Hb_005348_150 Hb_000322_030 Hb_000322_030 Hb_000984_150--Hb_000322_030 Hb_001369_010 Hb_001369_010 Hb_000984_150--Hb_001369_010 Hb_000417_050 Hb_000417_050 Hb_000984_150--Hb_000417_050 Hb_001677_040 Hb_001677_040 Hb_000984_150--Hb_001677_040 Hb_001544_050 Hb_001544_050 Hb_000984_150--Hb_001544_050 Hb_008179_030 Hb_008179_030 Hb_000984_150--Hb_008179_030 Hb_047659_010 Hb_047659_010 Hb_000622_170--Hb_047659_010 Hb_000991_030 Hb_000991_030 Hb_000622_170--Hb_000991_030 Hb_008053_030 Hb_008053_030 Hb_000622_170--Hb_008053_030 Hb_004117_090 Hb_004117_090 Hb_000622_170--Hb_004117_090 Hb_000417_090 Hb_000417_090 Hb_000622_170--Hb_000417_090 Hb_071674_010 Hb_071674_010 Hb_000622_170--Hb_071674_010 Hb_007224_010 Hb_007224_010 Hb_021409_110--Hb_007224_010 Hb_089305_010 Hb_089305_010 Hb_021409_110--Hb_089305_010 Hb_001621_050 Hb_001621_050 Hb_021409_110--Hb_001621_050 Hb_000110_260 Hb_000110_260 Hb_021409_110--Hb_000110_260 Hb_001863_340 Hb_001863_340 Hb_021409_110--Hb_001863_340 Hb_005725_280 Hb_005725_280 Hb_021409_110--Hb_005725_280 Hb_003813_180 Hb_003813_180 Hb_008279_030--Hb_003813_180 Hb_011004_050 Hb_011004_050 Hb_008279_030--Hb_011004_050 Hb_002662_040 Hb_002662_040 Hb_008279_030--Hb_002662_040 Hb_006634_100 Hb_006634_100 Hb_008279_030--Hb_006634_100 Hb_004163_030 Hb_004163_030 Hb_008279_030--Hb_004163_030 Hb_000011_410 Hb_000011_410 Hb_008279_030--Hb_000011_410 Hb_000032_410 Hb_000032_410 Hb_000915_130--Hb_000032_410 Hb_005357_110 Hb_005357_110 Hb_000915_130--Hb_005357_110 Hb_005511_130 Hb_005511_130 Hb_000915_130--Hb_005511_130 Hb_000042_110 Hb_000042_110 Hb_000915_130--Hb_000042_110 Hb_000260_490 Hb_000260_490 Hb_000915_130--Hb_000260_490 Hb_004730_020 Hb_004730_020 Hb_000915_130--Hb_004730_020 Hb_012286_060 Hb_012286_060 Hb_005348_150--Hb_012286_060 Hb_000030_020 Hb_000030_020 Hb_005348_150--Hb_000030_020 Hb_118939_010 Hb_118939_010 Hb_005348_150--Hb_118939_010 Hb_119583_020 Hb_119583_020 Hb_005348_150--Hb_119583_020 Hb_000599_330 Hb_000599_330 Hb_005348_150--Hb_000599_330 Hb_000388_080 Hb_000388_080 Hb_005348_150--Hb_000388_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.189198 0.826591 2.08688 1.8364 0.160633 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.152853 0.491152 0 1.07909

CAGE analysis