Hb_000116_530

Information

Type rubber biosynthesis
Description Gene Name: Hydroxymethylglutaryl coenzyme A reductase
Location Contig116: 458599-461955
Sequence    

Annotation

kegg
ID rcu:RCOM_0612970
description hmg-CoA reductase, putative (EC:1.1.1.34)
nr
ID Q00583.1
description RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A reductase 3; Short=HMG-CoA reductase 3 [Hevea brasiliensis]
swissprot
ID Q00583
description 3-hydroxy-3-methylglutaryl-coenzyme A reductase 3 OS=Hevea brasiliensis GN=HMGR3 PE=2 SV=1
trembl
ID A0A067JY31
description 3-hydroxy-3-methylglutaryl coenzyme A reductase OS=Jatropha curcas GN=JCGZ_24298 PE=3 SV=1
Gene Ontology
ID GO:0005789
description 3-hydroxy-3-methylglutaryl coenzyme a reductase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04901: 458845-461909
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_530 0.0 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A reductase RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A reductase 3; Short=HMG-CoA reductase 3 [Hevea brasiliensis]
2 Hb_003058_170 0.1126477563 - - PREDICTED: F-box protein At2g26850 isoform X1 [Jatropha curcas]
3 Hb_003125_090 0.1165772178 - - -
4 Hb_002636_070 0.1183525421 - - PREDICTED: putative U-box domain-containing protein 42 [Jatropha curcas]
5 Hb_001541_280 0.1208721611 - - phosphate transporter [Manihot esculenta]
6 Hb_027337_130 0.1230523573 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Jatropha curcas]
7 Hb_004934_130 0.1303065508 - - 12-oxophytodienoate reductase 2 isoform 1 [Theobroma cacao]
8 Hb_000270_640 0.1316445554 - - hypothetical protein POPTR_0012s07880g [Populus trichocarpa]
9 Hb_002713_060 0.1339429213 - - PREDICTED: protein NRT1/ PTR FAMILY 6.4 [Jatropha curcas]
10 Hb_000705_040 0.1349938266 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000033_010 0.1366628688 - - Protein MLO, putative [Ricinus communis]
12 Hb_002226_090 0.1376350711 - - Stachyose synthase precursor, putative [Ricinus communis]
13 Hb_000207_160 0.1378131623 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Populus euphratica]
14 Hb_003018_150 0.1385072761 - - PREDICTED: uncharacterized protein LOC105628869 [Jatropha curcas]
15 Hb_020141_030 0.1391996081 - - solanesyl diphosphate synthase, putative [Ricinus communis]
16 Hb_000373_010 0.1415271496 - - ATP binding protein, putative [Ricinus communis]
17 Hb_029223_010 0.1422655446 - - PREDICTED: ACT domain-containing protein ACR10 [Jatropha curcas]
18 Hb_002814_010 0.1430145449 - - PREDICTED: adenylate kinase 5, chloroplastic [Jatropha curcas]
19 Hb_005183_040 0.1449391364 desease resistance Gene Name: NB-ARC Disease resistance protein RPM1, putative [Ricinus communis]
20 Hb_004979_070 0.1451073267 - - wall-associated receptor kinase galacturonan-binding protein [Medicago truncatula]

Gene co-expression network

sample Hb_000116_530 Hb_000116_530 Hb_003058_170 Hb_003058_170 Hb_000116_530--Hb_003058_170 Hb_003125_090 Hb_003125_090 Hb_000116_530--Hb_003125_090 Hb_002636_070 Hb_002636_070 Hb_000116_530--Hb_002636_070 Hb_001541_280 Hb_001541_280 Hb_000116_530--Hb_001541_280 Hb_027337_130 Hb_027337_130 Hb_000116_530--Hb_027337_130 Hb_004934_130 Hb_004934_130 Hb_000116_530--Hb_004934_130 Hb_000076_060 Hb_000076_060 Hb_003058_170--Hb_000076_060 Hb_003018_150 Hb_003018_150 Hb_003058_170--Hb_003018_150 Hb_002713_060 Hb_002713_060 Hb_003058_170--Hb_002713_060 Hb_001210_060 Hb_001210_060 Hb_003058_170--Hb_001210_060 Hb_000847_030 Hb_000847_030 Hb_003058_170--Hb_000847_030 Hb_029223_010 Hb_029223_010 Hb_003058_170--Hb_029223_010 Hb_000207_160 Hb_000207_160 Hb_003125_090--Hb_000207_160 Hb_033363_030 Hb_033363_030 Hb_003125_090--Hb_033363_030 Hb_096224_050 Hb_096224_050 Hb_003125_090--Hb_096224_050 Hb_004979_070 Hb_004979_070 Hb_003125_090--Hb_004979_070 Hb_007904_110 Hb_007904_110 Hb_003125_090--Hb_007904_110 Hb_004979_080 Hb_004979_080 Hb_003125_090--Hb_004979_080 Hb_002636_070--Hb_029223_010 Hb_000680_130 Hb_000680_130 Hb_002636_070--Hb_000680_130 Hb_002636_070--Hb_002713_060 Hb_000705_040 Hb_000705_040 Hb_002636_070--Hb_000705_040 Hb_000270_640 Hb_000270_640 Hb_002636_070--Hb_000270_640 Hb_002636_070--Hb_027337_130 Hb_001541_280--Hb_000270_640 Hb_001541_280--Hb_000847_030 Hb_002814_010 Hb_002814_010 Hb_001541_280--Hb_002814_010 Hb_020141_030 Hb_020141_030 Hb_001541_280--Hb_020141_030 Hb_000140_460 Hb_000140_460 Hb_001541_280--Hb_000140_460 Hb_000002_300 Hb_000002_300 Hb_001541_280--Hb_000002_300 Hb_188075_010 Hb_188075_010 Hb_027337_130--Hb_188075_010 Hb_000574_340 Hb_000574_340 Hb_027337_130--Hb_000574_340 Hb_004291_050 Hb_004291_050 Hb_027337_130--Hb_004291_050 Hb_008461_070 Hb_008461_070 Hb_027337_130--Hb_008461_070 Hb_000033_010 Hb_000033_010 Hb_027337_130--Hb_000033_010 Hb_004934_130--Hb_002814_010 Hb_004934_130--Hb_002713_060 Hb_000920_100 Hb_000920_100 Hb_004934_130--Hb_000920_100 Hb_066293_010 Hb_066293_010 Hb_004934_130--Hb_066293_010 Hb_002226_090 Hb_002226_090 Hb_004934_130--Hb_002226_090 Hb_004934_130--Hb_001541_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.82816 2.70021 3.02399 0.025366 0.00799647
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0191755 0.482836 0.0574355 0.887287 8.96435

CAGE analysis