Hb_113347_010

Information

Type -
Description -
Location Contig113347: 411-1940
Sequence    

Annotation

kegg
ID rcu:RCOM_0515670
description protein with unknown function
nr
ID KDO61104.1
description hypothetical protein CISIN_1g009336mg [Citrus sinensis]
swissprot
ID Q9SR71
description Transcription initiation factor TFIID subunit 12 OS=Arabidopsis thaliana GN=TAF12 PE=1 SV=1
trembl
ID A0A067F135
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g009336mg PE=4 SV=1
Gene Ontology
ID GO:0005669
description transcription initiation factor tfiid subunit 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_113347_010 0.0 - - hypothetical protein CISIN_1g009336mg [Citrus sinensis]
2 Hb_114310_070 0.0930739875 - - GTP-dependent nucleic acid-binding protein engD, putative [Ricinus communis]
3 Hb_000220_210 0.1011689781 - - PREDICTED: sec-independent protein translocase protein TATC, chloroplastic [Jatropha curcas]
4 Hb_002542_160 0.1087058651 - - PREDICTED: peptide chain release factor APG3, chloroplastic [Jatropha curcas]
5 Hb_033312_010 0.1118202909 - - PREDICTED: valine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
6 Hb_001832_200 0.1118222375 - - PREDICTED: PCI domain-containing protein 2 isoform X1 [Jatropha curcas]
7 Hb_000300_470 0.1131015692 - - PREDICTED: nucleolin-like [Jatropha curcas]
8 Hb_000237_200 0.1150659843 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
9 Hb_004339_040 0.1165491349 - - hypothetical protein POPTR_0162s00290g, partial [Populus trichocarpa]
10 Hb_001438_010 0.1181477659 - - PREDICTED: uncharacterized protein LOC105639111 isoform X1 [Jatropha curcas]
11 Hb_000032_500 0.1183684276 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
12 Hb_010174_090 0.1185999955 - - PREDICTED: ALBINO3-like protein 1, chloroplastic [Jatropha curcas]
13 Hb_005260_030 0.1191738726 - - PREDICTED: uncharacterized protein LOC105633782 [Jatropha curcas]
14 Hb_001109_050 0.1198226313 - - PREDICTED: ankyrin-1 [Jatropha curcas]
15 Hb_000243_120 0.1201221859 - - PREDICTED: MORC family CW-type zinc finger protein 3-like isoform X2 [Jatropha curcas]
16 Hb_004884_180 0.1215488153 - - PREDICTED: protein TIC 56, chloroplastic [Jatropha curcas]
17 Hb_003355_010 0.1221726161 - - Heat shock 70 kDa protein, putative [Ricinus communis]
18 Hb_017469_110 0.1228509255 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
19 Hb_004109_260 0.1240542078 - - hypothetical protein JCGZ_06843 [Jatropha curcas]
20 Hb_026053_040 0.1240578704 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_113347_010 Hb_113347_010 Hb_114310_070 Hb_114310_070 Hb_113347_010--Hb_114310_070 Hb_000220_210 Hb_000220_210 Hb_113347_010--Hb_000220_210 Hb_002542_160 Hb_002542_160 Hb_113347_010--Hb_002542_160 Hb_033312_010 Hb_033312_010 Hb_113347_010--Hb_033312_010 Hb_001832_200 Hb_001832_200 Hb_113347_010--Hb_001832_200 Hb_000300_470 Hb_000300_470 Hb_113347_010--Hb_000300_470 Hb_114310_070--Hb_033312_010 Hb_000237_200 Hb_000237_200 Hb_114310_070--Hb_000237_200 Hb_000748_090 Hb_000748_090 Hb_114310_070--Hb_000748_090 Hb_007012_030 Hb_007012_030 Hb_114310_070--Hb_007012_030 Hb_002876_300 Hb_002876_300 Hb_114310_070--Hb_002876_300 Hb_002150_140 Hb_002150_140 Hb_114310_070--Hb_002150_140 Hb_000220_210--Hb_002542_160 Hb_000309_020 Hb_000309_020 Hb_000220_210--Hb_000309_020 Hb_000345_370 Hb_000345_370 Hb_000220_210--Hb_000345_370 Hb_001427_040 Hb_001427_040 Hb_000220_210--Hb_001427_040 Hb_001472_160 Hb_001472_160 Hb_000220_210--Hb_001472_160 Hb_004884_180 Hb_004884_180 Hb_000220_210--Hb_004884_180 Hb_002542_160--Hb_000309_020 Hb_002542_160--Hb_000345_370 Hb_000085_070 Hb_000085_070 Hb_002542_160--Hb_000085_070 Hb_016461_030 Hb_016461_030 Hb_002542_160--Hb_016461_030 Hb_000032_500 Hb_000032_500 Hb_002542_160--Hb_000032_500 Hb_013405_080 Hb_013405_080 Hb_033312_010--Hb_013405_080 Hb_001660_120 Hb_001660_120 Hb_033312_010--Hb_001660_120 Hb_134849_010 Hb_134849_010 Hb_033312_010--Hb_134849_010 Hb_002774_190 Hb_002774_190 Hb_033312_010--Hb_002774_190 Hb_033312_010--Hb_000032_500 Hb_001105_040 Hb_001105_040 Hb_001832_200--Hb_001105_040 Hb_001882_010 Hb_001882_010 Hb_001832_200--Hb_001882_010 Hb_025194_050 Hb_025194_050 Hb_001832_200--Hb_025194_050 Hb_010863_050 Hb_010863_050 Hb_001832_200--Hb_010863_050 Hb_000108_020 Hb_000108_020 Hb_001832_200--Hb_000108_020 Hb_068079_010 Hb_068079_010 Hb_001832_200--Hb_068079_010 Hb_000300_470--Hb_013405_080 Hb_005260_030 Hb_005260_030 Hb_000300_470--Hb_005260_030 Hb_000300_470--Hb_000237_200 Hb_000300_470--Hb_002774_190 Hb_000046_540 Hb_000046_540 Hb_000300_470--Hb_000046_540 Hb_004218_190 Hb_004218_190 Hb_000300_470--Hb_004218_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.700665 1.36215 3.01133 1.31416 1.50583 1.14324
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.758091 1.90557 0.794281 2.09523 4.15775

CAGE analysis