Hb_103990_010

Information

Type -
Description -
Location Contig103990: 159-982
Sequence    

Annotation

kegg
ID pop:POPTR_0004s00480g
description chromoplast-specific carotenoid-associated protein CHRC
nr
ID XP_009804524.1
description PREDICTED: light-induced protein, chloroplastic-like [Nicotiana sylvestris]
swissprot
ID Q9ZWQ8
description Plastid-lipid-associated protein, chloroplastic OS=Citrus unshiu GN=PAP PE=2 SV=1
trembl
ID A9CSJ8
description Putative plastid lipid-associated protein (Fragment) OS=Vitis hybrid cultivar GN=tamPAP-FB PE=2 SV=1
Gene Ontology
ID GO:0009507
description plastid-lipid-associated chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_103990_010 0.0 - - PREDICTED: light-induced protein, chloroplastic-like [Nicotiana sylvestris]
2 Hb_000340_410 0.1960637631 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
3 Hb_027654_070 0.1972761748 - - conserved hypothetical protein [Ricinus communis]
4 Hb_007317_170 0.2018043895 - - PREDICTED: protein FANTASTIC FOUR 1 [Jatropha curcas]
5 Hb_000603_270 0.2085885901 - - PREDICTED: uncharacterized protein LOC105638080 [Jatropha curcas]
6 Hb_001347_030 0.217535984 - - ubiquitin-protein ligase, putative [Ricinus communis]
7 Hb_004447_050 0.2191495994 - - PREDICTED: high-light-induced protein, chloroplastic [Jatropha curcas]
8 Hb_188063_030 0.2201136969 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
9 Hb_002498_170 0.2217334585 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
10 Hb_002443_010 0.2225012925 - - multicopper oxidase, putative [Ricinus communis]
11 Hb_003055_030 0.2235468416 - - PREDICTED: glycine-rich cell wall structural protein 2 [Jatropha curcas]
12 Hb_001862_070 0.2239821088 - - hypothetical protein RCOM_1155060 [Ricinus communis]
13 Hb_002603_090 0.2245082588 - - PREDICTED: GDSL esterase/lipase CPRD49-like isoform X2 [Populus euphratica]
14 Hb_001975_050 0.2261407357 - - Tyrosine-specific transport protein, putative [Ricinus communis]
15 Hb_007504_030 0.2320704435 - - Rpl14, partial (chloroplast) [Schistostemon retusum]
16 Hb_007479_010 0.233598427 - - Root phototropism protein, putative [Ricinus communis]
17 Hb_002851_040 0.2350523472 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 5 [Jatropha curcas]
18 Hb_004705_070 0.236911656 - - PREDICTED: uncharacterized protein LOC105647312 isoform X1 [Jatropha curcas]
19 Hb_011485_080 0.2369853074 - - PREDICTED: 50S ribosomal protein L29, chloroplastic [Jatropha curcas]
20 Hb_002999_030 0.2377545008 - - PREDICTED: beta-1,3-galactosyltransferase 15 [Jatropha curcas]

Gene co-expression network

sample Hb_103990_010 Hb_103990_010 Hb_000340_410 Hb_000340_410 Hb_103990_010--Hb_000340_410 Hb_027654_070 Hb_027654_070 Hb_103990_010--Hb_027654_070 Hb_007317_170 Hb_007317_170 Hb_103990_010--Hb_007317_170 Hb_000603_270 Hb_000603_270 Hb_103990_010--Hb_000603_270 Hb_001347_030 Hb_001347_030 Hb_103990_010--Hb_001347_030 Hb_004447_050 Hb_004447_050 Hb_103990_010--Hb_004447_050 Hb_002498_170 Hb_002498_170 Hb_000340_410--Hb_002498_170 Hb_188063_030 Hb_188063_030 Hb_000340_410--Hb_188063_030 Hb_014320_010 Hb_014320_010 Hb_000340_410--Hb_014320_010 Hb_006252_030 Hb_006252_030 Hb_000340_410--Hb_006252_030 Hb_006846_160 Hb_006846_160 Hb_000340_410--Hb_006846_160 Hb_000322_040 Hb_000322_040 Hb_000340_410--Hb_000322_040 Hb_001975_050 Hb_001975_050 Hb_027654_070--Hb_001975_050 Hb_003992_050 Hb_003992_050 Hb_027654_070--Hb_003992_050 Hb_001343_120 Hb_001343_120 Hb_027654_070--Hb_001343_120 Hb_000207_140 Hb_000207_140 Hb_027654_070--Hb_000207_140 Hb_002540_060 Hb_002540_060 Hb_027654_070--Hb_002540_060 Hb_002435_090 Hb_002435_090 Hb_027654_070--Hb_002435_090 Hb_007504_030 Hb_007504_030 Hb_007317_170--Hb_007504_030 Hb_003055_030 Hb_003055_030 Hb_007317_170--Hb_003055_030 Hb_000768_120 Hb_000768_120 Hb_007317_170--Hb_000768_120 Hb_004117_150 Hb_004117_150 Hb_007317_170--Hb_004117_150 Hb_004208_090 Hb_004208_090 Hb_007317_170--Hb_004208_090 Hb_000130_330 Hb_000130_330 Hb_007317_170--Hb_000130_330 Hb_000603_270--Hb_007504_030 Hb_002400_010 Hb_002400_010 Hb_000603_270--Hb_002400_010 Hb_000603_270--Hb_002498_170 Hb_000603_270--Hb_000340_410 Hb_001352_080 Hb_001352_080 Hb_000603_270--Hb_001352_080 Hb_000603_270--Hb_000322_040 Hb_000042_390 Hb_000042_390 Hb_001347_030--Hb_000042_390 Hb_001536_020 Hb_001536_020 Hb_001347_030--Hb_001536_020 Hb_010863_030 Hb_010863_030 Hb_001347_030--Hb_010863_030 Hb_000061_430 Hb_000061_430 Hb_001347_030--Hb_000061_430 Hb_029432_010 Hb_029432_010 Hb_001347_030--Hb_029432_010 Hb_007574_020 Hb_007574_020 Hb_001347_030--Hb_007574_020 Hb_000032_360 Hb_000032_360 Hb_004447_050--Hb_000032_360 Hb_010683_030 Hb_010683_030 Hb_004447_050--Hb_010683_030 Hb_001141_350 Hb_001141_350 Hb_004447_050--Hb_001141_350 Hb_007479_010 Hb_007479_010 Hb_004447_050--Hb_007479_010 Hb_004855_070 Hb_004855_070 Hb_004447_050--Hb_004855_070 Hb_000130_130 Hb_000130_130 Hb_004447_050--Hb_000130_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.05125 0.213129 6.1998 1.78523 1.1174 0.698119
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 2.52405

CAGE analysis