Hb_065161_010

Information

Type -
Description -
Location Contig65161: 1797-5728
Sequence    

Annotation

kegg
ID rcu:RCOM_0574890
description hypothetical protein
nr
ID XP_002529761.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID F4K4R6
description Protein GAMETE EXPRESSED 2 OS=Arabidopsis thaliana GN=GEX2 PE=2 SV=1
trembl
ID B9SUU2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0574890 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52576: 5387-5764
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_065161_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004899_330 0.2333017547 transcription factor TF Family: Tify plastid jasmonates ZIM-domain protein [Hevea brasiliensis]
3 Hb_011915_040 0.2540957742 - - hypothetical protein POPTR_0009s15120g [Populus trichocarpa]
4 Hb_000062_590 0.2546953049 - - ubiquitin-protein ligase, putative [Ricinus communis]
5 Hb_001688_070 0.2564116243 - - PREDICTED: L-Ala-D/L-amino acid epimerase isoform X1 [Jatropha curcas]
6 Hb_051997_020 0.258824571 - - PREDICTED: uncharacterized protein LOC100266863 [Vitis vinifera]
7 Hb_001711_010 0.262158005 - - -
8 Hb_001085_300 0.2652048718 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
9 Hb_000272_110 0.2675782822 - - PREDICTED: uncharacterized protein LOC105633479 isoform X1 [Jatropha curcas]
10 Hb_001016_140 0.2686993022 - - PREDICTED: uncharacterized protein LOC105647117 [Jatropha curcas]
11 Hb_069591_010 0.2724155545 - - -
12 Hb_092408_010 0.2724207476 transcription factor TF Family: TRAF PREDICTED: BTB/POZ and MATH domain-containing protein 3 isoform X2 [Jatropha curcas]
13 Hb_044653_080 0.2780056274 - - Uncharacterized protein TCM_045144 [Theobroma cacao]
14 Hb_015807_030 0.2790986021 - - PREDICTED: protein NDR1-like [Jatropha curcas]
15 Hb_000638_150 0.2806818504 - - PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]
16 Hb_001898_150 0.2828277311 - - PREDICTED: uncharacterized protein LOC105629671 [Jatropha curcas]
17 Hb_004837_220 0.2830127477 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
18 Hb_163968_010 0.2831346986 - - vesicle-associated membrane protein, putative [Ricinus communis]
19 Hb_056196_060 0.2845677368 - - hexokinase [Manihot esculenta]
20 Hb_000840_070 0.2850373701 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_065161_010 Hb_065161_010 Hb_004899_330 Hb_004899_330 Hb_065161_010--Hb_004899_330 Hb_011915_040 Hb_011915_040 Hb_065161_010--Hb_011915_040 Hb_000062_590 Hb_000062_590 Hb_065161_010--Hb_000062_590 Hb_001688_070 Hb_001688_070 Hb_065161_010--Hb_001688_070 Hb_051997_020 Hb_051997_020 Hb_065161_010--Hb_051997_020 Hb_001711_010 Hb_001711_010 Hb_065161_010--Hb_001711_010 Hb_004899_330--Hb_000062_590 Hb_001638_030 Hb_001638_030 Hb_004899_330--Hb_001638_030 Hb_174829_020 Hb_174829_020 Hb_004899_330--Hb_174829_020 Hb_001484_020 Hb_001484_020 Hb_004899_330--Hb_001484_020 Hb_002685_200 Hb_002685_200 Hb_004899_330--Hb_002685_200 Hb_001235_170 Hb_001235_170 Hb_004899_330--Hb_001235_170 Hb_000009_220 Hb_000009_220 Hb_011915_040--Hb_000009_220 Hb_156635_020 Hb_156635_020 Hb_011915_040--Hb_156635_020 Hb_000048_080 Hb_000048_080 Hb_011915_040--Hb_000048_080 Hb_000086_430 Hb_000086_430 Hb_011915_040--Hb_000086_430 Hb_004943_030 Hb_004943_030 Hb_011915_040--Hb_004943_030 Hb_003605_050 Hb_003605_050 Hb_011915_040--Hb_003605_050 Hb_001085_300 Hb_001085_300 Hb_000062_590--Hb_001085_300 Hb_001195_350 Hb_001195_350 Hb_000062_590--Hb_001195_350 Hb_000000_340 Hb_000000_340 Hb_000062_590--Hb_000000_340 Hb_000866_140 Hb_000866_140 Hb_000062_590--Hb_000866_140 Hb_005488_120 Hb_005488_120 Hb_000062_590--Hb_005488_120 Hb_083493_010 Hb_083493_010 Hb_001688_070--Hb_083493_010 Hb_000062_490 Hb_000062_490 Hb_001688_070--Hb_000062_490 Hb_000567_350 Hb_000567_350 Hb_001688_070--Hb_000567_350 Hb_008112_010 Hb_008112_010 Hb_001688_070--Hb_008112_010 Hb_187021_010 Hb_187021_010 Hb_001688_070--Hb_187021_010 Hb_012743_010 Hb_012743_010 Hb_001688_070--Hb_012743_010 Hb_001454_070 Hb_001454_070 Hb_051997_020--Hb_001454_070 Hb_009620_100 Hb_009620_100 Hb_051997_020--Hb_009620_100 Hb_010789_020 Hb_010789_020 Hb_051997_020--Hb_010789_020 Hb_010381_010 Hb_010381_010 Hb_051997_020--Hb_010381_010 Hb_000197_200 Hb_000197_200 Hb_051997_020--Hb_000197_200 Hb_000009_610 Hb_000009_610 Hb_051997_020--Hb_000009_610 Hb_000011_050 Hb_000011_050 Hb_001711_010--Hb_000011_050 Hb_001711_010--Hb_004899_330 Hb_001898_150 Hb_001898_150 Hb_001711_010--Hb_001898_150 Hb_001711_010--Hb_011915_040 Hb_171718_020 Hb_171718_020 Hb_001711_010--Hb_171718_020 Hb_003305_030 Hb_003305_030 Hb_001711_010--Hb_003305_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0924347 0.265959 0.315123 0.180372 0 0.0649834
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0846056 0 0.118232 0.135497 0

CAGE analysis