Hb_010531_030

Information

Type -
Description -
Location Contig10531: 36809-37498
Sequence    

Annotation

kegg
ID rcu:RCOM_0759630
description hypothetical protein
nr
ID XP_012066657.1
description PREDICTED: uncharacterized protein LOC105629654 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LD60
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00232 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01810: 36703-37280 , PASA_asmbl_01811: 37394-37547
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010531_030 0.0 - - PREDICTED: uncharacterized protein LOC105629654 [Jatropha curcas]
2 Hb_011512_090 0.1165957999 - - Hydroxyethylthiazole kinase, putative [Ricinus communis]
3 Hb_002110_030 0.1251827851 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
4 Hb_000575_120 0.134460138 - - hypothetical protein POPTR_0011s02060g [Populus trichocarpa]
5 Hb_001621_130 0.1348140259 - - PREDICTED: pumilio homolog 1-like isoform X1 [Jatropha curcas]
6 Hb_001221_150 0.1368231749 - - AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]
7 Hb_000237_190 0.1374270273 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3 isoform X1 [Jatropha curcas]
8 Hb_002005_090 0.1379757004 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001301_170 0.1404022444 - - PREDICTED: purple acid phosphatase 18 [Jatropha curcas]
10 Hb_012799_120 0.1419019836 - - PREDICTED: DNA mismatch repair protein MSH3 isoform X1 [Jatropha curcas]
11 Hb_005214_090 0.1439712542 - - PREDICTED: uncharacterized protein LOC105636015 [Jatropha curcas]
12 Hb_011716_090 0.1447330832 transcription factor TF Family: HRT putative transciption factor family protein [Populus trichocarpa]
13 Hb_005048_100 0.1449696218 - - secretory carrier membrane protein, putative [Ricinus communis]
14 Hb_000853_120 0.1455487805 - - PREDICTED: ethylene response sensor 1 [Jatropha curcas]
15 Hb_000976_040 0.1465659707 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]
16 Hb_000200_280 0.1467578822 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
17 Hb_001575_010 0.1479594906 - - PREDICTED: pumilio homolog 6, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_010053_030 0.1480326415 - - PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase [Jatropha curcas]
19 Hb_001416_020 0.1480583613 - - H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]
20 Hb_000136_090 0.1493952953 - - programmed cell death protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_010531_030 Hb_010531_030 Hb_011512_090 Hb_011512_090 Hb_010531_030--Hb_011512_090 Hb_002110_030 Hb_002110_030 Hb_010531_030--Hb_002110_030 Hb_000575_120 Hb_000575_120 Hb_010531_030--Hb_000575_120 Hb_001621_130 Hb_001621_130 Hb_010531_030--Hb_001621_130 Hb_001221_150 Hb_001221_150 Hb_010531_030--Hb_001221_150 Hb_000237_190 Hb_000237_190 Hb_010531_030--Hb_000237_190 Hb_000976_040 Hb_000976_040 Hb_011512_090--Hb_000976_040 Hb_011512_090--Hb_002110_030 Hb_002400_400 Hb_002400_400 Hb_011512_090--Hb_002400_400 Hb_000200_280 Hb_000200_280 Hb_011512_090--Hb_000200_280 Hb_002005_090 Hb_002005_090 Hb_011512_090--Hb_002005_090 Hb_011512_090--Hb_001621_130 Hb_006831_040 Hb_006831_040 Hb_002110_030--Hb_006831_040 Hb_001019_180 Hb_001019_180 Hb_002110_030--Hb_001019_180 Hb_073562_010 Hb_073562_010 Hb_002110_030--Hb_073562_010 Hb_000330_040 Hb_000330_040 Hb_002110_030--Hb_000330_040 Hb_001575_010 Hb_001575_010 Hb_002110_030--Hb_001575_010 Hb_000015_060 Hb_000015_060 Hb_000575_120--Hb_000015_060 Hb_003058_060 Hb_003058_060 Hb_000575_120--Hb_003058_060 Hb_000453_060 Hb_000453_060 Hb_000575_120--Hb_000453_060 Hb_000009_570 Hb_000009_570 Hb_000575_120--Hb_000009_570 Hb_000012_260 Hb_000012_260 Hb_000575_120--Hb_000012_260 Hb_000575_120--Hb_002110_030 Hb_010053_030 Hb_010053_030 Hb_001621_130--Hb_010053_030 Hb_000369_130 Hb_000369_130 Hb_001621_130--Hb_000369_130 Hb_006478_060 Hb_006478_060 Hb_001621_130--Hb_006478_060 Hb_000343_030 Hb_000343_030 Hb_001621_130--Hb_000343_030 Hb_000923_080 Hb_000923_080 Hb_001621_130--Hb_000923_080 Hb_000505_020 Hb_000505_020 Hb_001621_130--Hb_000505_020 Hb_067193_010 Hb_067193_010 Hb_001221_150--Hb_067193_010 Hb_001028_070 Hb_001028_070 Hb_001221_150--Hb_001028_070 Hb_000120_610 Hb_000120_610 Hb_001221_150--Hb_000120_610 Hb_004659_080 Hb_004659_080 Hb_001221_150--Hb_004659_080 Hb_000594_020 Hb_000594_020 Hb_001221_150--Hb_000594_020 Hb_001417_050 Hb_001417_050 Hb_001221_150--Hb_001417_050 Hb_000130_020 Hb_000130_020 Hb_000237_190--Hb_000130_020 Hb_025194_020 Hb_025194_020 Hb_000237_190--Hb_025194_020 Hb_002259_080 Hb_002259_080 Hb_000237_190--Hb_002259_080 Hb_000365_030 Hb_000365_030 Hb_000237_190--Hb_000365_030 Hb_178968_050 Hb_178968_050 Hb_000237_190--Hb_178968_050 Hb_030736_070 Hb_030736_070 Hb_000237_190--Hb_030736_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.03472 13.2117 4.79825 4.4251 15.4702 11.1648
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.62258 5.51575 4.27708 14.5043 1.53731

CAGE analysis