Hb_000015_060

Information

Type -
Description -
Location Contig15: 54516-56207
Sequence    

Annotation

kegg
ID smo:SELMODRAFT_446707
description hypothetical protein
nr
ID XP_009792871.1
description PREDICTED: uncharacterized protein LOC104239844 isoform X2 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID K4C552
description Uncharacterized protein OS=Solanum lycopersicum GN=Solyc06g042980.2 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000015_060 0.0 - - PREDICTED: uncharacterized protein LOC104239844 isoform X2 [Nicotiana sylvestris]
2 Hb_000575_120 0.0771742122 - - hypothetical protein POPTR_0011s02060g [Populus trichocarpa]
3 Hb_000656_380 0.0858493957 - - PREDICTED: exportin-T [Jatropha curcas]
4 Hb_003097_170 0.1008294959 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like isoform X3 [Jatropha curcas]
5 Hb_003177_060 0.1011393099 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X1 [Jatropha curcas]
6 Hb_000856_310 0.1019081298 - - PREDICTED: hypersensitive-induced response protein 1 [Jatropha curcas]
7 Hb_003058_060 0.1021584485 - - PREDICTED: proteasome-associated protein ECM29 homolog [Jatropha curcas]
8 Hb_000012_260 0.1032613175 - - Far upstream element-binding 2 [Gossypium arboreum]
9 Hb_002477_090 0.1085947601 - - PREDICTED: uncharacterized protein LOC105631409 isoform X1 [Jatropha curcas]
10 Hb_002005_090 0.1108685558 - - conserved hypothetical protein [Ricinus communis]
11 Hb_015175_050 0.11177142 - - PREDICTED: AT-hook motif nuclear-localized protein 10 isoform X3 [Jatropha curcas]
12 Hb_005214_090 0.1128143969 - - PREDICTED: uncharacterized protein LOC105636015 [Jatropha curcas]
13 Hb_001761_130 0.113837235 - - PREDICTED: uncharacterized protein LOC105646118 isoform X1 [Jatropha curcas]
14 Hb_004235_080 0.1144243581 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
15 Hb_000009_570 0.1154288625 - - PREDICTED: cytochrome P450 CYP82D47-like [Populus euphratica]
16 Hb_004954_070 0.1157724003 - - PREDICTED: uncharacterized protein LOC105645187 [Jatropha curcas]
17 Hb_000369_130 0.1159384465 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Jatropha curcas]
18 Hb_001529_040 0.117486145 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
19 Hb_000703_150 0.1184570927 - - PREDICTED: F-box/LRR-repeat MAX2 homolog A [Jatropha curcas]
20 Hb_000453_060 0.1193811024 - - PREDICTED: pentatricopeptide repeat-containing protein At4g11690 [Jatropha curcas]

Gene co-expression network

sample Hb_000015_060 Hb_000015_060 Hb_000575_120 Hb_000575_120 Hb_000015_060--Hb_000575_120 Hb_000656_380 Hb_000656_380 Hb_000015_060--Hb_000656_380 Hb_003097_170 Hb_003097_170 Hb_000015_060--Hb_003097_170 Hb_003177_060 Hb_003177_060 Hb_000015_060--Hb_003177_060 Hb_000856_310 Hb_000856_310 Hb_000015_060--Hb_000856_310 Hb_003058_060 Hb_003058_060 Hb_000015_060--Hb_003058_060 Hb_000575_120--Hb_003058_060 Hb_000453_060 Hb_000453_060 Hb_000575_120--Hb_000453_060 Hb_000009_570 Hb_000009_570 Hb_000575_120--Hb_000009_570 Hb_000012_260 Hb_000012_260 Hb_000575_120--Hb_000012_260 Hb_002110_030 Hb_002110_030 Hb_000575_120--Hb_002110_030 Hb_000656_380--Hb_000012_260 Hb_000494_070 Hb_000494_070 Hb_000656_380--Hb_000494_070 Hb_000173_490 Hb_000173_490 Hb_000656_380--Hb_000173_490 Hb_000579_230 Hb_000579_230 Hb_000656_380--Hb_000579_230 Hb_001946_340 Hb_001946_340 Hb_000656_380--Hb_001946_340 Hb_002784_020 Hb_002784_020 Hb_000656_380--Hb_002784_020 Hb_004235_080 Hb_004235_080 Hb_003097_170--Hb_004235_080 Hb_000923_080 Hb_000923_080 Hb_003097_170--Hb_000923_080 Hb_000221_250 Hb_000221_250 Hb_003097_170--Hb_000221_250 Hb_000020_150 Hb_000020_150 Hb_003097_170--Hb_000020_150 Hb_004429_100 Hb_004429_100 Hb_003097_170--Hb_004429_100 Hb_001030_110 Hb_001030_110 Hb_003097_170--Hb_001030_110 Hb_003498_120 Hb_003498_120 Hb_003177_060--Hb_003498_120 Hb_007426_130 Hb_007426_130 Hb_003177_060--Hb_007426_130 Hb_001821_090 Hb_001821_090 Hb_003177_060--Hb_001821_090 Hb_000069_410 Hb_000069_410 Hb_003177_060--Hb_000069_410 Hb_012184_060 Hb_012184_060 Hb_003177_060--Hb_012184_060 Hb_000740_100 Hb_000740_100 Hb_003177_060--Hb_000740_100 Hb_000244_220 Hb_000244_220 Hb_000856_310--Hb_000244_220 Hb_004602_040 Hb_004602_040 Hb_000856_310--Hb_004602_040 Hb_005214_090 Hb_005214_090 Hb_000856_310--Hb_005214_090 Hb_000369_130 Hb_000369_130 Hb_000856_310--Hb_000369_130 Hb_017862_020 Hb_017862_020 Hb_000856_310--Hb_017862_020 Hb_000739_100 Hb_000739_100 Hb_000856_310--Hb_000739_100 Hb_003058_060--Hb_000369_130 Hb_003058_060--Hb_001821_090 Hb_002107_070 Hb_002107_070 Hb_003058_060--Hb_002107_070 Hb_002170_050 Hb_002170_050 Hb_003058_060--Hb_002170_050 Hb_003058_060--Hb_000579_230 Hb_104061_020 Hb_104061_020 Hb_003058_060--Hb_104061_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.21383 5.86394 2.68867 2.01997 3.65488 6.67838
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.33047 2.50734 3.12636 6.85649 2.23153

CAGE analysis