Hb_006847_030

Information

Type -
Description -
Location Contig6847: 47207-48895
Sequence    

Annotation

kegg
ID pop:POPTR_0006s21940g
description POPTRDRAFT_561152; hypothetical protein
nr
ID XP_012074312.1
description PREDICTED: BTB/POZ domain-containing protein At3g05675-like isoform X2 [Jatropha curcas]
swissprot
ID Q8RX01
description BTB/POZ domain-containing protein At3g05675 OS=Arabidopsis thaliana GN=At3g05675 PE=2 SV=1
trembl
ID A0A067KJ03
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08756 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54085: 45678-48002 , PASA_asmbl_54086: 48619-48793
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006847_030 0.0 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like isoform X2 [Jatropha curcas]
2 Hb_000185_210 0.1746196319 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
3 Hb_021576_080 0.1944431445 - - PREDICTED: BTB/POZ domain-containing protein NPY1 [Jatropha curcas]
4 Hb_000088_190 0.2015087538 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003734_060 0.2038629539 - - PREDICTED: uncharacterized protein LOC105632818 isoform X2 [Jatropha curcas]
6 Hb_000028_070 0.2105457419 - - PREDICTED: uncharacterized protein LOC105645310 [Jatropha curcas]
7 Hb_000025_210 0.2126799788 - - PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial [Jatropha curcas]
8 Hb_002876_220 0.2138363362 - - PREDICTED: uncharacterized protein LOC105633932 [Jatropha curcas]
9 Hb_007002_020 0.2171280342 - - PREDICTED: uncharacterized protein LOC105642604 [Jatropha curcas]
10 Hb_000163_100 0.2182279048 - - PREDICTED: uncharacterized protein LOC105642537 [Jatropha curcas]
11 Hb_014834_130 0.2185129652 - - PREDICTED: formyltetrahydrofolate deformylase 1, mitochondrial-like [Jatropha curcas]
12 Hb_000174_030 0.2203057275 - - hypothetical protein RCOM_1077370 [Ricinus communis]
13 Hb_020805_080 0.2204946895 - - PREDICTED: uncharacterized protein LOC105635198 [Jatropha curcas]
14 Hb_021732_010 0.2205391492 - - biotin carboxylase [Vernicia fordii]
15 Hb_002234_060 0.2209184086 - - F-box protein, atfbl3, putative [Ricinus communis]
16 Hb_171900_040 0.2217319912 - - PREDICTED: probable mitochondrial import inner membrane translocase subunit TIM21 [Jatropha curcas]
17 Hb_011214_050 0.2217507174 - - phytoene synthase 2 [Manihot esculenta]
18 Hb_001329_090 0.2220673656 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000122_190 0.2230872339 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
20 Hb_007811_040 0.2231457767 - - PREDICTED: trafficking protein particle complex subunit 4 isoform X1 [Gossypium raimondii]

Gene co-expression network

sample Hb_006847_030 Hb_006847_030 Hb_000185_210 Hb_000185_210 Hb_006847_030--Hb_000185_210 Hb_021576_080 Hb_021576_080 Hb_006847_030--Hb_021576_080 Hb_000088_190 Hb_000088_190 Hb_006847_030--Hb_000088_190 Hb_003734_060 Hb_003734_060 Hb_006847_030--Hb_003734_060 Hb_000028_070 Hb_000028_070 Hb_006847_030--Hb_000028_070 Hb_000025_210 Hb_000025_210 Hb_006847_030--Hb_000025_210 Hb_002876_220 Hb_002876_220 Hb_000185_210--Hb_002876_220 Hb_012022_150 Hb_012022_150 Hb_000185_210--Hb_012022_150 Hb_003029_070 Hb_003029_070 Hb_000185_210--Hb_003029_070 Hb_002477_300 Hb_002477_300 Hb_000185_210--Hb_002477_300 Hb_008173_020 Hb_008173_020 Hb_000185_210--Hb_008173_020 Hb_000012_250 Hb_000012_250 Hb_000185_210--Hb_000012_250 Hb_001541_110 Hb_001541_110 Hb_021576_080--Hb_001541_110 Hb_000003_780 Hb_000003_780 Hb_021576_080--Hb_000003_780 Hb_005332_080 Hb_005332_080 Hb_021576_080--Hb_005332_080 Hb_000122_190 Hb_000122_190 Hb_021576_080--Hb_000122_190 Hb_000431_150 Hb_000431_150 Hb_021576_080--Hb_000431_150 Hb_001329_090 Hb_001329_090 Hb_021576_080--Hb_001329_090 Hb_171900_040 Hb_171900_040 Hb_000088_190--Hb_171900_040 Hb_000757_030 Hb_000757_030 Hb_000088_190--Hb_000757_030 Hb_010931_070 Hb_010931_070 Hb_000088_190--Hb_010931_070 Hb_003363_070 Hb_003363_070 Hb_000088_190--Hb_003363_070 Hb_002498_140 Hb_002498_140 Hb_000088_190--Hb_002498_140 Hb_000046_040 Hb_000046_040 Hb_000088_190--Hb_000046_040 Hb_002168_060 Hb_002168_060 Hb_003734_060--Hb_002168_060 Hb_004619_080 Hb_004619_080 Hb_003734_060--Hb_004619_080 Hb_028872_080 Hb_028872_080 Hb_003734_060--Hb_028872_080 Hb_002871_190 Hb_002871_190 Hb_003734_060--Hb_002871_190 Hb_002374_570 Hb_002374_570 Hb_003734_060--Hb_002374_570 Hb_003734_060--Hb_000025_210 Hb_004410_080 Hb_004410_080 Hb_000028_070--Hb_004410_080 Hb_000260_800 Hb_000260_800 Hb_000028_070--Hb_000260_800 Hb_001998_120 Hb_001998_120 Hb_000028_070--Hb_001998_120 Hb_002946_190 Hb_002946_190 Hb_000028_070--Hb_002946_190 Hb_011519_010 Hb_011519_010 Hb_000028_070--Hb_011519_010 Hb_000163_100 Hb_000163_100 Hb_000028_070--Hb_000163_100 Hb_048476_110 Hb_048476_110 Hb_000025_210--Hb_048476_110 Hb_002183_070 Hb_002183_070 Hb_000025_210--Hb_002183_070 Hb_034482_020 Hb_034482_020 Hb_000025_210--Hb_034482_020 Hb_000059_360 Hb_000059_360 Hb_000025_210--Hb_000059_360 Hb_000046_100 Hb_000046_100 Hb_000025_210--Hb_000046_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.299066 0.0199642 1.13705 0.0995246 0.25454 0.159475
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.329056 0.431309 0.790444 0.138982 0.526914

CAGE analysis