Hb_005883_080

Information

Type -
Description -
Location Contig5883: 77289-81329
Sequence    

Annotation

kegg
ID pop:POPTR_0015s07950g
description POPTRDRAFT_824629; type 2A protein phosphatase-2
nr
ID XP_002321547.1
description type 2A protein phosphatase-2 [Populus trichocarpa]
swissprot
ID Q9ZSE4
description Serine/threonine-protein phosphatase PP2A catalytic subunit OS=Hevea brasiliensis GN=PP2A PE=2 SV=1
trembl
ID B9IEI9
description Serine/threonine-protein phosphatase OS=Populus trichocarpa GN=POPTR_0015s07950g PE=3 SV=1
Gene Ontology
ID GO:0004721
description serine threonine-protein phosphatase pp2a catalytic subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50045: 77338-81343
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005883_080 0.0 - - type 2A protein phosphatase-2 [Populus trichocarpa]
2 Hb_000330_090 0.0919828666 - - ornithine carbamoyltransferase, putative [Ricinus communis]
3 Hb_049575_010 0.0977219587 - - hypothetical protein POPTR_0001s15330g [Populus trichocarpa]
4 Hb_000537_100 0.1032575438 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
5 Hb_040819_010 0.1037534546 - - protein phosphatase 2c, putative [Ricinus communis]
6 Hb_003498_100 0.1070268783 - - component of oligomeric golgi complex, putative [Ricinus communis]
7 Hb_000926_080 0.1098673843 - - PREDICTED: paraspeckle component 1 [Jatropha curcas]
8 Hb_000128_060 0.1125360376 - - PREDICTED: sodium/pyruvate cotransporter BASS2, chloroplastic isoform X1 [Vitis vinifera]
9 Hb_073973_090 0.112765822 - - Aminotransferase ybdL, putative [Ricinus communis]
10 Hb_007904_230 0.1132776907 - - PREDICTED: D-cysteine desulfhydrase 2, mitochondrial [Jatropha curcas]
11 Hb_178968_060 0.113980548 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
12 Hb_000926_200 0.1152866095 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
13 Hb_001882_010 0.1166039532 - - -
14 Hb_006588_190 0.1170167881 - - PREDICTED: ataxin-3 homolog [Jatropha curcas]
15 Hb_001898_050 0.1171703651 - - PREDICTED: 60S ribosomal protein L3 [Eucalyptus grandis]
16 Hb_000120_890 0.117935722 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
17 Hb_001178_010 0.1189449397 - - PREDICTED: uncharacterized protein LOC105629461 [Jatropha curcas]
18 Hb_001804_090 0.1193126307 - - PREDICTED: uracil phosphoribosyltransferase isoform X1 [Jatropha curcas]
19 Hb_000163_260 0.1197426285 - - PREDICTED: uncharacterized protein LOC105642518 [Jatropha curcas]
20 Hb_187247_020 0.1199435402 - - PREDICTED: uncharacterized protein LOC101220469 [Cucumis sativus]

Gene co-expression network

sample Hb_005883_080 Hb_005883_080 Hb_000330_090 Hb_000330_090 Hb_005883_080--Hb_000330_090 Hb_049575_010 Hb_049575_010 Hb_005883_080--Hb_049575_010 Hb_000537_100 Hb_000537_100 Hb_005883_080--Hb_000537_100 Hb_040819_010 Hb_040819_010 Hb_005883_080--Hb_040819_010 Hb_003498_100 Hb_003498_100 Hb_005883_080--Hb_003498_100 Hb_000926_080 Hb_000926_080 Hb_005883_080--Hb_000926_080 Hb_000330_090--Hb_049575_010 Hb_000174_260 Hb_000174_260 Hb_000330_090--Hb_000174_260 Hb_001269_130 Hb_001269_130 Hb_000330_090--Hb_001269_130 Hb_002693_030 Hb_002693_030 Hb_000330_090--Hb_002693_030 Hb_007904_230 Hb_007904_230 Hb_000330_090--Hb_007904_230 Hb_007199_020 Hb_007199_020 Hb_000330_090--Hb_007199_020 Hb_073973_090 Hb_073973_090 Hb_049575_010--Hb_073973_090 Hb_049575_010--Hb_007904_230 Hb_001269_620 Hb_001269_620 Hb_049575_010--Hb_001269_620 Hb_007558_090 Hb_007558_090 Hb_049575_010--Hb_007558_090 Hb_000364_050 Hb_000364_050 Hb_049575_010--Hb_000364_050 Hb_029622_120 Hb_029622_120 Hb_000537_100--Hb_029622_120 Hb_005946_040 Hb_005946_040 Hb_000537_100--Hb_005946_040 Hb_000537_100--Hb_073973_090 Hb_002631_240 Hb_002631_240 Hb_000537_100--Hb_002631_240 Hb_002316_140 Hb_002316_140 Hb_000537_100--Hb_002316_140 Hb_001178_010 Hb_001178_010 Hb_000537_100--Hb_001178_010 Hb_000926_200 Hb_000926_200 Hb_040819_010--Hb_000926_200 Hb_004984_030 Hb_004984_030 Hb_040819_010--Hb_004984_030 Hb_002028_090 Hb_002028_090 Hb_040819_010--Hb_002028_090 Hb_000035_160 Hb_000035_160 Hb_040819_010--Hb_000035_160 Hb_032202_100 Hb_032202_100 Hb_040819_010--Hb_032202_100 Hb_000116_490 Hb_000116_490 Hb_040819_010--Hb_000116_490 Hb_000120_890 Hb_000120_890 Hb_003498_100--Hb_000120_890 Hb_178968_060 Hb_178968_060 Hb_003498_100--Hb_178968_060 Hb_089839_010 Hb_089839_010 Hb_003498_100--Hb_089839_010 Hb_001279_190 Hb_001279_190 Hb_003498_100--Hb_001279_190 Hb_000703_190 Hb_000703_190 Hb_003498_100--Hb_000703_190 Hb_001799_160 Hb_001799_160 Hb_003498_100--Hb_001799_160 Hb_000200_300 Hb_000200_300 Hb_000926_080--Hb_000200_300 Hb_003266_030 Hb_003266_030 Hb_000926_080--Hb_003266_030 Hb_000086_080 Hb_000086_080 Hb_000926_080--Hb_000086_080 Hb_004965_110 Hb_004965_110 Hb_000926_080--Hb_004965_110 Hb_006907_060 Hb_006907_060 Hb_000926_080--Hb_006907_060 Hb_027506_040 Hb_027506_040 Hb_000926_080--Hb_027506_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.62773 4.90561 14.4321 9.54006 3.98264 1.81198
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.16446 9.9671 3.06428 6.82607 10.001

CAGE analysis