Hb_004567_110

Information

Type -
Description -
Location Contig4567: 63359-64775
Sequence    

Annotation

kegg
ID pop:POPTR_0002s24610g
description POPTRDRAFT_553189; hypothetical protein
nr
ID XP_002303052.1
description hypothetical protein POPTR_0002s24610g [Populus trichocarpa]
swissprot
ID Q94CD1
description Omega-hydroxypalmitate O-feruloyl transferase OS=Arabidopsis thaliana GN=HHT1 PE=1 SV=1
trembl
ID B9GQK3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s24610g PE=4 SV=1
Gene Ontology
ID GO:0016747
description omega-hydroxypalmitate o-feruloyl transferase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43451: 65691-67758
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004567_110 0.0 - - hypothetical protein POPTR_0002s24610g [Populus trichocarpa]
2 Hb_007545_110 0.1977477691 - - catalytic, putative [Ricinus communis]
3 Hb_000020_080 0.1990059687 transcription factor TF Family: MYB hypothetical protein JCGZ_09080 [Jatropha curcas]
4 Hb_038044_010 0.1990511405 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
5 Hb_031266_030 0.2027342194 - - Kinase superfamily protein isoform 1 [Theobroma cacao]
6 Hb_004223_170 0.202760704 - - PREDICTED: ATP sulfurylase 2 [Jatropha curcas]
7 Hb_000175_300 0.2041941564 - - PREDICTED: uncharacterized protein LOC105634858 [Jatropha curcas]
8 Hb_012753_150 0.2059074965 transcription factor TF Family: GRAS DELLA protein RGL1, putative [Ricinus communis]
9 Hb_006289_020 0.2070336738 - - PREDICTED: shugoshin-1 isoform X1 [Jatropha curcas]
10 Hb_003428_040 0.2088571969 - - PREDICTED: phosphoenolpyruvate/phosphate translocator 2, chloroplastic-like [Jatropha curcas]
11 Hb_000907_140 0.2144629903 - - PREDICTED: annexin D5-like [Jatropha curcas]
12 Hb_000088_240 0.215282882 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
13 Hb_000236_480 0.2164645415 - - PREDICTED: cytochrome P450 CYP72A219-like [Jatropha curcas]
14 Hb_007101_040 0.2181531844 - - PREDICTED: MLP-like protein 423 [Populus euphratica]
15 Hb_002942_120 0.2210074355 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
16 Hb_001761_010 0.2210368473 - - PREDICTED: uncharacterized protein LOC105639282 [Jatropha curcas]
17 Hb_003688_220 0.2228975556 - - unknown [Populus trichocarpa]
18 Hb_002400_050 0.2229318247 - - PREDICTED: uncharacterized protein LOC105637632 isoform X1 [Jatropha curcas]
19 Hb_007076_010 0.224106952 - - calcium-dependent protein kinase, putative [Ricinus communis]
20 Hb_000230_190 0.2244945088 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004567_110 Hb_004567_110 Hb_007545_110 Hb_007545_110 Hb_004567_110--Hb_007545_110 Hb_000020_080 Hb_000020_080 Hb_004567_110--Hb_000020_080 Hb_038044_010 Hb_038044_010 Hb_004567_110--Hb_038044_010 Hb_031266_030 Hb_031266_030 Hb_004567_110--Hb_031266_030 Hb_004223_170 Hb_004223_170 Hb_004567_110--Hb_004223_170 Hb_000175_300 Hb_000175_300 Hb_004567_110--Hb_000175_300 Hb_007545_110--Hb_038044_010 Hb_022092_040 Hb_022092_040 Hb_007545_110--Hb_022092_040 Hb_000260_610 Hb_000260_610 Hb_007545_110--Hb_000260_610 Hb_024973_020 Hb_024973_020 Hb_007545_110--Hb_024973_020 Hb_000032_200 Hb_000032_200 Hb_007545_110--Hb_000032_200 Hb_176472_020 Hb_176472_020 Hb_007545_110--Hb_176472_020 Hb_012753_150 Hb_012753_150 Hb_000020_080--Hb_012753_150 Hb_107078_010 Hb_107078_010 Hb_000020_080--Hb_107078_010 Hb_000388_040 Hb_000388_040 Hb_000020_080--Hb_000388_040 Hb_006060_010 Hb_006060_010 Hb_000020_080--Hb_006060_010 Hb_004218_050 Hb_004218_050 Hb_000020_080--Hb_004218_050 Hb_000020_080--Hb_007545_110 Hb_001501_070 Hb_001501_070 Hb_038044_010--Hb_001501_070 Hb_029510_130 Hb_029510_130 Hb_038044_010--Hb_029510_130 Hb_038044_010--Hb_024973_020 Hb_001478_020 Hb_001478_020 Hb_038044_010--Hb_001478_020 Hb_002942_120 Hb_002942_120 Hb_038044_010--Hb_002942_120 Hb_031266_030--Hb_012753_150 Hb_003599_060 Hb_003599_060 Hb_031266_030--Hb_003599_060 Hb_031266_030--Hb_006060_010 Hb_014497_070 Hb_014497_070 Hb_031266_030--Hb_014497_070 Hb_003878_060 Hb_003878_060 Hb_031266_030--Hb_003878_060 Hb_031266_030--Hb_000388_040 Hb_008643_220 Hb_008643_220 Hb_004223_170--Hb_008643_220 Hb_004223_170--Hb_004218_050 Hb_002170_060 Hb_002170_060 Hb_004223_170--Hb_002170_060 Hb_010683_070 Hb_010683_070 Hb_004223_170--Hb_010683_070 Hb_007313_030 Hb_007313_030 Hb_004223_170--Hb_007313_030 Hb_001269_060 Hb_001269_060 Hb_004223_170--Hb_001269_060 Hb_001541_190 Hb_001541_190 Hb_000175_300--Hb_001541_190 Hb_000069_300 Hb_000069_300 Hb_000175_300--Hb_000069_300 Hb_000190_220 Hb_000190_220 Hb_000175_300--Hb_000190_220 Hb_001307_020 Hb_001307_020 Hb_000175_300--Hb_001307_020 Hb_001633_160 Hb_001633_160 Hb_000175_300--Hb_001633_160 Hb_004679_040 Hb_004679_040 Hb_000175_300--Hb_004679_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.102063 0.553346 0.161064 0 0.013834
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0359468 0 0.0528633 0.0791556 0.0588366

CAGE analysis