Hb_004449_120

Information

Type -
Description -
Location Contig4449: 72320-76905
Sequence    

Annotation

kegg
ID rcu:RCOM_0622470
description ubiquitin-protein ligase, putative
nr
ID XP_012068757.1
description PREDICTED: uncharacterized protein LOC105631291 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L918
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24598 PE=4 SV=1
Gene Ontology
ID GO:0005515
description zinc ion binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42825: 72237-72474 , PASA_asmbl_42827: 72495-76024 , PASA_asmbl_42828: 73070-73171 , PASA_asmbl_42829: 73516-73935 , PASA_asmbl_42830: 74551-74900
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004449_120 0.0 - - PREDICTED: uncharacterized protein LOC105631291 [Jatropha curcas]
2 Hb_002811_140 0.0921646301 - - PREDICTED: uncharacterized protein LOC105647665 [Jatropha curcas]
3 Hb_000134_250 0.1222028929 - - protein with unknown function [Ricinus communis]
4 Hb_034243_040 0.1289537672 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1-like [Jatropha curcas]
5 Hb_006501_010 0.1333776534 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A isoform X1 [Populus euphratica]
6 Hb_007413_040 0.1360585867 - - myo inositol monophosphatase, putative [Ricinus communis]
7 Hb_001662_040 0.1429274775 - - DNA helicase, putative [Ricinus communis]
8 Hb_000940_050 0.1440172566 - - hypothetical protein JCGZ_19588 [Jatropha curcas]
9 Hb_002374_230 0.1445073678 - - PREDICTED: centromere-associated protein E [Jatropha curcas]
10 Hb_033554_020 0.1476451661 transcription factor TF Family: BES1 PREDICTED: beta-amylase 8 [Jatropha curcas]
11 Hb_000098_240 0.1502532877 - - PREDICTED: UDP-glucose:glycoprotein glucosyltransferase [Jatropha curcas]
12 Hb_000086_560 0.1513469983 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Jatropha curcas]
13 Hb_032823_020 0.1519004269 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000002_120 0.1524785416 - - PREDICTED: uncharacterized protein LOC105782064 [Gossypium raimondii]
15 Hb_000098_140 0.1526343554 - - hypothetical protein JCGZ_04989 [Jatropha curcas]
16 Hb_005323_010 0.1531653767 - - PREDICTED: uncharacterized protein LOC105642810 [Jatropha curcas]
17 Hb_000175_410 0.1535107942 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
18 Hb_013358_070 0.1541558931 - - protein with unknown function [Ricinus communis]
19 Hb_000139_220 0.1541971464 - - leucine rich repeat-containing protein, putative [Ricinus communis]
20 Hb_005333_160 0.1551588039 - - hypothetical protein B456_009G230200 [Gossypium raimondii]

Gene co-expression network

sample Hb_004449_120 Hb_004449_120 Hb_002811_140 Hb_002811_140 Hb_004449_120--Hb_002811_140 Hb_000134_250 Hb_000134_250 Hb_004449_120--Hb_000134_250 Hb_034243_040 Hb_034243_040 Hb_004449_120--Hb_034243_040 Hb_006501_010 Hb_006501_010 Hb_004449_120--Hb_006501_010 Hb_007413_040 Hb_007413_040 Hb_004449_120--Hb_007413_040 Hb_001662_040 Hb_001662_040 Hb_004449_120--Hb_001662_040 Hb_002811_140--Hb_000134_250 Hb_002811_140--Hb_034243_040 Hb_002811_140--Hb_001662_040 Hb_033554_020 Hb_033554_020 Hb_002811_140--Hb_033554_020 Hb_002291_060 Hb_002291_060 Hb_002811_140--Hb_002291_060 Hb_000994_020 Hb_000994_020 Hb_000134_250--Hb_000994_020 Hb_001373_160 Hb_001373_160 Hb_000134_250--Hb_001373_160 Hb_000260_770 Hb_000260_770 Hb_000134_250--Hb_000260_770 Hb_009659_030 Hb_009659_030 Hb_000134_250--Hb_009659_030 Hb_000134_250--Hb_006501_010 Hb_010287_030 Hb_010287_030 Hb_000134_250--Hb_010287_030 Hb_001089_070 Hb_001089_070 Hb_034243_040--Hb_001089_070 Hb_002311_310 Hb_002311_310 Hb_034243_040--Hb_002311_310 Hb_000847_080 Hb_000847_080 Hb_034243_040--Hb_000847_080 Hb_000563_420 Hb_000563_420 Hb_034243_040--Hb_000563_420 Hb_000098_140 Hb_000098_140 Hb_034243_040--Hb_000098_140 Hb_000002_120 Hb_000002_120 Hb_034243_040--Hb_000002_120 Hb_006501_010--Hb_000994_020 Hb_000082_010 Hb_000082_010 Hb_006501_010--Hb_000082_010 Hb_005723_020 Hb_005723_020 Hb_006501_010--Hb_005723_020 Hb_015026_100 Hb_015026_100 Hb_006501_010--Hb_015026_100 Hb_006501_010--Hb_007413_040 Hb_002686_040 Hb_002686_040 Hb_006501_010--Hb_002686_040 Hb_000019_190 Hb_000019_190 Hb_007413_040--Hb_000019_190 Hb_023313_040 Hb_023313_040 Hb_007413_040--Hb_023313_040 Hb_004096_160 Hb_004096_160 Hb_007413_040--Hb_004096_160 Hb_005730_010 Hb_005730_010 Hb_007413_040--Hb_005730_010 Hb_000236_490 Hb_000236_490 Hb_007413_040--Hb_000236_490 Hb_001931_030 Hb_001931_030 Hb_007413_040--Hb_001931_030 Hb_163591_010 Hb_163591_010 Hb_001662_040--Hb_163591_010 Hb_001662_040--Hb_000002_120 Hb_000023_320 Hb_000023_320 Hb_001662_040--Hb_000023_320 Hb_002067_030 Hb_002067_030 Hb_001662_040--Hb_002067_030 Hb_000371_010 Hb_000371_010 Hb_001662_040--Hb_000371_010 Hb_001662_040--Hb_000098_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.72827 1.80745 5.44415 1.80358 2.9854 3.09721
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.852727 1.36278 0.237505 3.46697 1.89617

CAGE analysis