Hb_002811_140

Information

Type -
Description -
Location Contig2811: 125870-127984
Sequence    

Annotation

kegg
ID pop:POPTR_0013s03450g
description POPTRDRAFT_571006; hypothetical protein
nr
ID XP_012089225.1
description PREDICTED: uncharacterized protein LOC105647665 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JLD5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23471 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29409: 127006-127789
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002811_140 0.0 - - PREDICTED: uncharacterized protein LOC105647665 [Jatropha curcas]
2 Hb_004449_120 0.0921646301 - - PREDICTED: uncharacterized protein LOC105631291 [Jatropha curcas]
3 Hb_000134_250 0.1536677621 - - protein with unknown function [Ricinus communis]
4 Hb_034243_040 0.1652689927 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1-like [Jatropha curcas]
5 Hb_001662_040 0.1753316181 - - DNA helicase, putative [Ricinus communis]
6 Hb_033554_020 0.1771547567 transcription factor TF Family: BES1 PREDICTED: beta-amylase 8 [Jatropha curcas]
7 Hb_002291_060 0.1817443028 - - PREDICTED: splicing factor 3A subunit 3-like isoform X1 [Fragaria vesca subsp. vesca]
8 Hb_001931_030 0.1825418491 - - PREDICTED: T-complex protein 1 subunit eta-like [Nelumbo nucifera]
9 Hb_007413_040 0.1834975399 - - myo inositol monophosphatase, putative [Ricinus communis]
10 Hb_001375_040 0.1835242272 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
11 Hb_006501_010 0.184869181 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A isoform X1 [Populus euphratica]
12 Hb_001114_090 0.1851789212 - - PREDICTED: magnesium-dependent phosphatase 1 [Jatropha curcas]
13 Hb_005323_010 0.1859014912 - - PREDICTED: uncharacterized protein LOC105642810 [Jatropha curcas]
14 Hb_003687_210 0.1860238218 - - PREDICTED: malate dehydrogenase [Populus euphratica]
15 Hb_001373_160 0.1883547873 - - hypothetical protein JCGZ_16907 [Jatropha curcas]
16 Hb_143629_150 0.1885850614 - - PREDICTED: flap endonuclease 1 isoform X2 [Prunus mume]
17 Hb_015292_040 0.1887255899 - - PREDICTED: myb-like protein X [Jatropha curcas]
18 Hb_000098_240 0.189578634 - - PREDICTED: UDP-glucose:glycoprotein glucosyltransferase [Jatropha curcas]
19 Hb_007894_210 0.1903566368 - - PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1 [Jatropha curcas]
20 Hb_002374_230 0.1915938057 - - PREDICTED: centromere-associated protein E [Jatropha curcas]

Gene co-expression network

sample Hb_002811_140 Hb_002811_140 Hb_004449_120 Hb_004449_120 Hb_002811_140--Hb_004449_120 Hb_000134_250 Hb_000134_250 Hb_002811_140--Hb_000134_250 Hb_034243_040 Hb_034243_040 Hb_002811_140--Hb_034243_040 Hb_001662_040 Hb_001662_040 Hb_002811_140--Hb_001662_040 Hb_033554_020 Hb_033554_020 Hb_002811_140--Hb_033554_020 Hb_002291_060 Hb_002291_060 Hb_002811_140--Hb_002291_060 Hb_004449_120--Hb_000134_250 Hb_004449_120--Hb_034243_040 Hb_006501_010 Hb_006501_010 Hb_004449_120--Hb_006501_010 Hb_007413_040 Hb_007413_040 Hb_004449_120--Hb_007413_040 Hb_004449_120--Hb_001662_040 Hb_000994_020 Hb_000994_020 Hb_000134_250--Hb_000994_020 Hb_001373_160 Hb_001373_160 Hb_000134_250--Hb_001373_160 Hb_000260_770 Hb_000260_770 Hb_000134_250--Hb_000260_770 Hb_009659_030 Hb_009659_030 Hb_000134_250--Hb_009659_030 Hb_000134_250--Hb_006501_010 Hb_010287_030 Hb_010287_030 Hb_000134_250--Hb_010287_030 Hb_001089_070 Hb_001089_070 Hb_034243_040--Hb_001089_070 Hb_002311_310 Hb_002311_310 Hb_034243_040--Hb_002311_310 Hb_000847_080 Hb_000847_080 Hb_034243_040--Hb_000847_080 Hb_000563_420 Hb_000563_420 Hb_034243_040--Hb_000563_420 Hb_000098_140 Hb_000098_140 Hb_034243_040--Hb_000098_140 Hb_000002_120 Hb_000002_120 Hb_034243_040--Hb_000002_120 Hb_163591_010 Hb_163591_010 Hb_001662_040--Hb_163591_010 Hb_001662_040--Hb_000002_120 Hb_000023_320 Hb_000023_320 Hb_001662_040--Hb_000023_320 Hb_002067_030 Hb_002067_030 Hb_001662_040--Hb_002067_030 Hb_000371_010 Hb_000371_010 Hb_001662_040--Hb_000371_010 Hb_001662_040--Hb_000098_140 Hb_033554_020--Hb_001373_160 Hb_000243_130 Hb_000243_130 Hb_033554_020--Hb_000243_130 Hb_006618_090 Hb_006618_090 Hb_033554_020--Hb_006618_090 Hb_000102_050 Hb_000102_050 Hb_033554_020--Hb_000102_050 Hb_033554_020--Hb_000994_020 Hb_033554_020--Hb_006501_010 Hb_000077_120 Hb_000077_120 Hb_002291_060--Hb_000077_120 Hb_044155_010 Hb_044155_010 Hb_002291_060--Hb_044155_010 Hb_000139_220 Hb_000139_220 Hb_002291_060--Hb_000139_220 Hb_000345_490 Hb_000345_490 Hb_002291_060--Hb_000345_490 Hb_002291_060--Hb_010287_030 Hb_172257_010 Hb_172257_010 Hb_002291_060--Hb_172257_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.125653 0.16813 0.510138 0.160179 0.327842 0.264542
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.114934 0.0903119 0 0.297959 0.172216

CAGE analysis