Hb_003124_260

Information

Type -
Description -
Location Contig3124: 188509-189202
Sequence    

Annotation

kegg
ID fve:101315023
description gibberellin 3-beta-dioxygenase 3-like
nr
ID XP_012078925.1
description PREDICTED: probable 2-oxoglutarate-dependent dioxygenase AOP1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K882
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13222 PE=3 SV=1
Gene Ontology
ID GO:0016491
description probable 2-oxoglutarate-dependent dioxygenase aop1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003124_260 0.0 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase AOP1 [Jatropha curcas]
2 Hb_000116_140 0.2594465325 - - dihydrodipicolinate synthase, putative [Ricinus communis]
3 Hb_010521_030 0.3505664412 - - -
4 Hb_007508_050 0.3513295142 - - PREDICTED: phosphoserine phosphatase, chloroplastic [Jatropha curcas]
5 Hb_000094_040 0.3640593886 - - -
6 Hb_003073_090 0.3655266116 transcription factor TF Family: B3 hypothetical protein POPTR_0004s23920g [Populus trichocarpa]
7 Hb_003688_160 0.3778776451 - - Presenilin-like family protein [Populus trichocarpa]
8 Hb_000450_150 0.3783832496 - - Anthocyanin 5-aromatic acyltransferase, putative [Ricinus communis]
9 Hb_000964_070 0.3817950401 - - PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]
10 Hb_127704_010 0.389302779 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_006911_050 0.3931626447 - - PREDICTED: uncharacterized protein LOC105628750 [Jatropha curcas]
12 Hb_119622_010 0.3960215351 - - LRR receptor-like kinase family protein [Medicago truncatula]
13 Hb_003688_170 0.398771454 - - PREDICTED: presenilin-like protein At2g29900 isoform X2 [Cucumis sativus]
14 Hb_005293_020 0.4012323835 - - conserved hypothetical protein [Ricinus communis]
15 Hb_020831_050 0.4017423441 - - Uncharacterized protein TCM_030492 [Theobroma cacao]
16 Hb_000161_020 0.4039574803 - - hypothetical protein CICLE_v10003356mg, partial [Citrus clementina]
17 Hb_001289_020 0.4042973385 - - PREDICTED: uncharacterized protein LOC105635827 [Jatropha curcas]
18 Hb_003175_110 0.404319888 - - -
19 Hb_000976_230 0.4050543614 - - PREDICTED: probable terpene synthase 4 [Jatropha curcas]
20 Hb_002217_280 0.4078928753 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003124_260 Hb_003124_260 Hb_000116_140 Hb_000116_140 Hb_003124_260--Hb_000116_140 Hb_010521_030 Hb_010521_030 Hb_003124_260--Hb_010521_030 Hb_007508_050 Hb_007508_050 Hb_003124_260--Hb_007508_050 Hb_000094_040 Hb_000094_040 Hb_003124_260--Hb_000094_040 Hb_003073_090 Hb_003073_090 Hb_003124_260--Hb_003073_090 Hb_003688_160 Hb_003688_160 Hb_003124_260--Hb_003688_160 Hb_005293_020 Hb_005293_020 Hb_000116_140--Hb_005293_020 Hb_002217_280 Hb_002217_280 Hb_000116_140--Hb_002217_280 Hb_002836_040 Hb_002836_040 Hb_000116_140--Hb_002836_040 Hb_001289_020 Hb_001289_020 Hb_000116_140--Hb_001289_020 Hb_000116_140--Hb_007508_050 Hb_010521_020 Hb_010521_020 Hb_010521_030--Hb_010521_020 Hb_003175_110 Hb_003175_110 Hb_010521_030--Hb_003175_110 Hb_113673_010 Hb_113673_010 Hb_010521_030--Hb_113673_010 Hb_104812_010 Hb_104812_010 Hb_010521_030--Hb_104812_010 Hb_000883_030 Hb_000883_030 Hb_010521_030--Hb_000883_030 Hb_119622_010 Hb_119622_010 Hb_010521_030--Hb_119622_010 Hb_000676_300 Hb_000676_300 Hb_007508_050--Hb_000676_300 Hb_059741_010 Hb_059741_010 Hb_007508_050--Hb_059741_010 Hb_039074_010 Hb_039074_010 Hb_007508_050--Hb_039074_010 Hb_000186_170 Hb_000186_170 Hb_007508_050--Hb_000186_170 Hb_177343_010 Hb_177343_010 Hb_007508_050--Hb_177343_010 Hb_000011_220 Hb_000011_220 Hb_007508_050--Hb_000011_220 Hb_000078_090 Hb_000078_090 Hb_000094_040--Hb_000078_090 Hb_000094_040--Hb_113673_010 Hb_000618_090 Hb_000618_090 Hb_000094_040--Hb_000618_090 Hb_063943_010 Hb_063943_010 Hb_000094_040--Hb_063943_010 Hb_000094_040--Hb_010521_030 Hb_001393_010 Hb_001393_010 Hb_000094_040--Hb_001393_010 Hb_001300_250 Hb_001300_250 Hb_003073_090--Hb_001300_250 Hb_001728_120 Hb_001728_120 Hb_003073_090--Hb_001728_120 Hb_000001_100 Hb_000001_100 Hb_003073_090--Hb_000001_100 Hb_005687_080 Hb_005687_080 Hb_003073_090--Hb_005687_080 Hb_002173_050 Hb_002173_050 Hb_003073_090--Hb_002173_050 Hb_041813_080 Hb_041813_080 Hb_003073_090--Hb_041813_080 Hb_004899_060 Hb_004899_060 Hb_003688_160--Hb_004899_060 Hb_052689_010 Hb_052689_010 Hb_003688_160--Hb_052689_010 Hb_174473_010 Hb_174473_010 Hb_003688_160--Hb_174473_010 Hb_001242_090 Hb_001242_090 Hb_003688_160--Hb_001242_090 Hb_000251_090 Hb_000251_090 Hb_003688_160--Hb_000251_090 Hb_089206_010 Hb_089206_010 Hb_003688_160--Hb_089206_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.1584 0 0 0.379916 0.276162 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.459411 0.036492 0.338561

CAGE analysis