Hb_002217_280

Information

Type -
Description -
Location Contig2217: 281491-283073
Sequence    

Annotation

kegg
ID rcu:RCOM_1001680
description hypothetical protein
nr
ID XP_002519269.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID P22242
description Desiccation-related protein PCC13-62 OS=Craterostigma plantagineum PE=2 SV=1
trembl
ID B9RZV0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1001680 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22928: 281512-283084
cDNA
(Sanger)
(ID:Location)		 031_E18.ab1: 281512-282790

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002217_280 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005293_020 0.128987805 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000100_060 0.2625237291 - - PREDICTED: probable glucan endo-1,3-beta-glucosidase A6 [Populus euphratica]
4 Hb_034507_040 0.2794864438 - - peptide transporter, putative [Ricinus communis]
5 Hb_000226_070 0.283251332 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump [Jatropha curcas]
6 Hb_007810_090 0.2932968319 - - actin actin-like protein [Coniophora puteana RWD-64-598 SS2]
7 Hb_000300_520 0.2957118993 - - hypothetical protein JCGZ_02702 [Jatropha curcas]
8 Hb_000281_060 0.2980544689 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
9 Hb_000139_110 0.2995857356 - - PREDICTED: mavicyanin [Jatropha curcas]
10 Hb_001486_050 0.2996833974 - - PREDICTED: arabinogalactan peptide 13-like [Jatropha curcas]
11 Hb_000116_140 0.2997175264 - - dihydrodipicolinate synthase, putative [Ricinus communis]
12 Hb_007925_010 0.3068935341 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 1 [Jatropha curcas]
13 Hb_001289_020 0.3079962545 - - PREDICTED: uncharacterized protein LOC105635827 [Jatropha curcas]
14 Hb_024074_020 0.3133484638 - - PREDICTED: probable serine/threonine-protein kinase At1g09600 [Jatropha curcas]
15 Hb_007632_100 0.3150639573 transcription factor TF Family: NF-YB ccaat-binding transcription factor subunit A, putative [Ricinus communis]
16 Hb_054865_160 0.3170984827 - - PREDICTED: D-arabinono-1,4-lactone oxidase-like [Jatropha curcas]
17 Hb_003185_070 0.3172577847 - - Plant natriuretic peptide A [Theobroma cacao]
18 Hb_145655_010 0.3175740423 - - PREDICTED: lactoylglutathione lyase [Jatropha curcas]
19 Hb_004117_120 0.3213377031 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
20 Hb_022174_010 0.3227148423 - - elicitor-responsive protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_002217_280 Hb_002217_280 Hb_005293_020 Hb_005293_020 Hb_002217_280--Hb_005293_020 Hb_000100_060 Hb_000100_060 Hb_002217_280--Hb_000100_060 Hb_034507_040 Hb_034507_040 Hb_002217_280--Hb_034507_040 Hb_000226_070 Hb_000226_070 Hb_002217_280--Hb_000226_070 Hb_007810_090 Hb_007810_090 Hb_002217_280--Hb_007810_090 Hb_000300_520 Hb_000300_520 Hb_002217_280--Hb_000300_520 Hb_000281_060 Hb_000281_060 Hb_005293_020--Hb_000281_060 Hb_000139_110 Hb_000139_110 Hb_005293_020--Hb_000139_110 Hb_005293_020--Hb_034507_040 Hb_005293_020--Hb_000226_070 Hb_024074_020 Hb_024074_020 Hb_005293_020--Hb_024074_020 Hb_001621_120 Hb_001621_120 Hb_000100_060--Hb_001621_120 Hb_000816_190 Hb_000816_190 Hb_000100_060--Hb_000816_190 Hb_000100_060--Hb_007810_090 Hb_002164_010 Hb_002164_010 Hb_000100_060--Hb_002164_010 Hb_001377_430 Hb_001377_430 Hb_000100_060--Hb_001377_430 Hb_000311_040 Hb_000311_040 Hb_000100_060--Hb_000311_040 Hb_188313_010 Hb_188313_010 Hb_034507_040--Hb_188313_010 Hb_034507_040--Hb_000311_040 Hb_054865_160 Hb_054865_160 Hb_034507_040--Hb_054865_160 Hb_001217_010 Hb_001217_010 Hb_034507_040--Hb_001217_010 Hb_011287_040 Hb_011287_040 Hb_034507_040--Hb_011287_040 Hb_001247_030 Hb_001247_030 Hb_034507_040--Hb_001247_030 Hb_010812_110 Hb_010812_110 Hb_000226_070--Hb_010812_110 Hb_001474_040 Hb_001474_040 Hb_000226_070--Hb_001474_040 Hb_000300_230 Hb_000300_230 Hb_000226_070--Hb_000300_230 Hb_002129_020 Hb_002129_020 Hb_000226_070--Hb_002129_020 Hb_000226_070--Hb_000300_520 Hb_002046_150 Hb_002046_150 Hb_000226_070--Hb_002046_150 Hb_007810_090--Hb_001377_430 Hb_005539_370 Hb_005539_370 Hb_007810_090--Hb_005539_370 Hb_000742_160 Hb_000742_160 Hb_007810_090--Hb_000742_160 Hb_007632_100 Hb_007632_100 Hb_007810_090--Hb_007632_100 Hb_066778_010 Hb_066778_010 Hb_007810_090--Hb_066778_010 Hb_069355_010 Hb_069355_010 Hb_000300_520--Hb_069355_010 Hb_000300_520--Hb_002129_020 Hb_001195_090 Hb_001195_090 Hb_000300_520--Hb_001195_090 Hb_001999_100 Hb_001999_100 Hb_000300_520--Hb_001999_100 Hb_001216_110 Hb_001216_110 Hb_000300_520--Hb_001216_110 Hb_032143_020 Hb_032143_020 Hb_000300_520--Hb_032143_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.8484 0.566228 4.15588 81.0247 16.9447 2.13723
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.11098 0.56525 15.8316 2.2114 4.51048

CAGE analysis