Hb_002836_040

Information

Type -
Description -
Location Contig2836: 57953-61394
Sequence    

Annotation

kegg
ID sbi:SORBI_06g016460
description SORBIDRAFT_06g016460, Sb06g016460; hypothetical protein
nr
ID KHN22918.1
description Auxin-induced protein 5NG4 [Glycine soja]
swissprot
ID F4IQX1
description WAT1-related protein At2g37450 OS=Arabidopsis thaliana GN=At2g37450 PE=2 SV=1
trembl
ID A0A0B2QSW3
description Auxin-induced protein 5NG4 OS=Glycine soja GN=glysoja_037412 PE=4 SV=1
Gene Ontology
ID GO:0016020
description wat1-related protein at1g25270-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29676: 58465-58911
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002836_040 0.0 - - Auxin-induced protein 5NG4 [Glycine soja]
2 Hb_004954_020 0.2683861617 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 51 isoform X2 [Jatropha curcas]
3 Hb_158832_010 0.2956925558 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000116_140 0.3092731366 - - dihydrodipicolinate synthase, putative [Ricinus communis]
5 Hb_000516_050 0.3128682999 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
6 Hb_053422_010 0.3181922105 - - PREDICTED: uncharacterized protein LOC105641005 [Jatropha curcas]
7 Hb_000122_120 0.3323660121 - - PREDICTED: arogenate dehydrogenase 1, chloroplastic-like [Jatropha curcas]
8 Hb_000920_090 0.3332006103 - - PREDICTED: LOW QUALITY PROTEIN: vinorine synthase-like [Jatropha curcas]
9 Hb_010175_010 0.3335646201 - - conserved hypothetical protein [Ricinus communis]
10 Hb_012002_010 0.3378195103 - - hypothetical protein VITISV_016116 [Vitis vinifera]
11 Hb_003333_040 0.3378322651 - - ankyrin repeat-containing protein, putative [Ricinus communis]
12 Hb_001579_210 0.3392201087 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000016_050 0.3543034995 - - PREDICTED: uncharacterized protein LOC105648535 [Jatropha curcas]
14 Hb_000200_080 0.3611177325 - - PREDICTED: uncharacterized protein LOC104877459 [Vitis vinifera]
15 Hb_001671_090 0.3617669455 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_004393_040 0.3698324506 transcription factor TF Family: RAV PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like isoform X2 [Jatropha curcas]
17 Hb_012633_060 0.3743796391 - - laccase, putative [Ricinus communis]
18 Hb_000454_040 0.3778736963 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
19 Hb_019516_090 0.3802683087 - - hypothetical protein POPTR_0004s06350g [Populus trichocarpa]
20 Hb_114271_010 0.3804451191 - - hypothetical protein JCGZ_19461 [Jatropha curcas]

Gene co-expression network

sample Hb_002836_040 Hb_002836_040 Hb_004954_020 Hb_004954_020 Hb_002836_040--Hb_004954_020 Hb_158832_010 Hb_158832_010 Hb_002836_040--Hb_158832_010 Hb_000116_140 Hb_000116_140 Hb_002836_040--Hb_000116_140 Hb_000516_050 Hb_000516_050 Hb_002836_040--Hb_000516_050 Hb_053422_010 Hb_053422_010 Hb_002836_040--Hb_053422_010 Hb_000122_120 Hb_000122_120 Hb_002836_040--Hb_000122_120 Hb_004108_190 Hb_004108_190 Hb_004954_020--Hb_004108_190 Hb_114271_010 Hb_114271_010 Hb_004954_020--Hb_114271_010 Hb_001148_060 Hb_001148_060 Hb_004954_020--Hb_001148_060 Hb_014361_030 Hb_014361_030 Hb_004954_020--Hb_014361_030 Hb_002542_060 Hb_002542_060 Hb_004954_020--Hb_002542_060 Hb_011994_070 Hb_011994_070 Hb_004954_020--Hb_011994_070 Hb_012002_010 Hb_012002_010 Hb_158832_010--Hb_012002_010 Hb_000664_100 Hb_000664_100 Hb_158832_010--Hb_000664_100 Hb_000200_080 Hb_000200_080 Hb_158832_010--Hb_000200_080 Hb_000905_050 Hb_000905_050 Hb_158832_010--Hb_000905_050 Hb_025213_020 Hb_025213_020 Hb_158832_010--Hb_025213_020 Hb_003124_260 Hb_003124_260 Hb_000116_140--Hb_003124_260 Hb_005293_020 Hb_005293_020 Hb_000116_140--Hb_005293_020 Hb_002217_280 Hb_002217_280 Hb_000116_140--Hb_002217_280 Hb_001289_020 Hb_001289_020 Hb_000116_140--Hb_001289_020 Hb_007508_050 Hb_007508_050 Hb_000116_140--Hb_007508_050 Hb_017358_070 Hb_017358_070 Hb_000516_050--Hb_017358_070 Hb_001227_070 Hb_001227_070 Hb_000516_050--Hb_001227_070 Hb_121089_050 Hb_121089_050 Hb_000516_050--Hb_121089_050 Hb_047418_010 Hb_047418_010 Hb_000516_050--Hb_047418_010 Hb_000454_040 Hb_000454_040 Hb_000516_050--Hb_000454_040 Hb_004236_040 Hb_004236_040 Hb_000516_050--Hb_004236_040 Hb_000879_170 Hb_000879_170 Hb_053422_010--Hb_000879_170 Hb_081930_010 Hb_081930_010 Hb_053422_010--Hb_081930_010 Hb_004108_180 Hb_004108_180 Hb_053422_010--Hb_004108_180 Hb_028487_060 Hb_028487_060 Hb_053422_010--Hb_028487_060 Hb_003768_020 Hb_003768_020 Hb_053422_010--Hb_003768_020 Hb_001431_090 Hb_001431_090 Hb_053422_010--Hb_001431_090 Hb_010175_010 Hb_010175_010 Hb_000122_120--Hb_010175_010 Hb_006154_020 Hb_006154_020 Hb_000122_120--Hb_006154_020 Hb_113084_010 Hb_113084_010 Hb_000122_120--Hb_113084_010 Hb_000668_090 Hb_000668_090 Hb_000122_120--Hb_000668_090 Hb_058620_060 Hb_058620_060 Hb_000122_120--Hb_058620_060 Hb_019516_090 Hb_019516_090 Hb_000122_120--Hb_019516_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.368825 0 0.0911743 0.322712 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.132794 0 0.516818

CAGE analysis