Hb_000905_050

Information

Type -
Description -
Location Contig905: 57590-63795
Sequence    

Annotation

kegg
ID rcu:RCOM_1525920
description Zeamatin precursor, putative
nr
ID XP_002513184.1
description Zeamatin precursor, putative [Ricinus communis]
swissprot
ID P28493
description Pathogenesis-related protein 5 OS=Arabidopsis thaliana GN=At1g75040 PE=1 SV=1
trembl
ID B9RHG5
description Zeamatin, putative OS=Ricinus communis GN=RCOM_1525920 PE=4 SV=1
Gene Ontology
ID GO:0016491
description pathogenesis-related protein 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000905_050 0.0 - - Zeamatin precursor, putative [Ricinus communis]
2 Hb_001102_120 0.1442410024 - - -
3 Hb_116701_030 0.2306785355 - - Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma cacao]
4 Hb_028872_020 0.24973948 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
5 Hb_129420_010 0.2633719303 transcription factor TF Family: NAC NAC transcription factor 059 [Jatropha curcas]
6 Hb_003183_010 0.2679408428 - - PREDICTED: uncharacterized protein LOC105785048, partial [Gossypium raimondii]
7 Hb_000914_010 0.2719458111 - - hypothetical protein POPTR_0025s00760g [Populus trichocarpa]
8 Hb_051410_010 0.2720184703 - - PREDICTED: uncharacterized protein LOC103401813 [Malus domestica]
9 Hb_000200_080 0.2726564333 - - PREDICTED: uncharacterized protein LOC104877459 [Vitis vinifera]
10 Hb_158832_010 0.2740717546 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002965_110 0.2759557097 - - hypothetical protein POPTR_0010s15040g [Populus trichocarpa]
12 Hb_012002_010 0.2778789361 - - hypothetical protein VITISV_016116 [Vitis vinifera]
13 Hb_000649_090 0.2805872255 - - unnamed protein product [Vitis vinifera]
14 Hb_011476_010 0.2914235002 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
15 Hb_004274_010 0.2957023197 - - PREDICTED: uncharacterized protein LOC104451199 [Eucalyptus grandis]
16 Hb_001221_350 0.2967954754 - - conserved hypothetical protein [Ricinus communis]
17 Hb_010721_040 0.2992916318 transcription factor TF Family: M-type unnamed protein product [Vitis vinifera]
18 Hb_000029_220 0.3016576896 - - PREDICTED: pre-mRNA-splicing factor SLU7-A-like [Jatropha curcas]
19 Hb_001452_150 0.302245277 - - PREDICTED: uncharacterized protein LOC104879858 [Vitis vinifera]
20 Hb_014102_010 0.3022543048 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_000905_050 Hb_000905_050 Hb_001102_120 Hb_001102_120 Hb_000905_050--Hb_001102_120 Hb_116701_030 Hb_116701_030 Hb_000905_050--Hb_116701_030 Hb_028872_020 Hb_028872_020 Hb_000905_050--Hb_028872_020 Hb_129420_010 Hb_129420_010 Hb_000905_050--Hb_129420_010 Hb_003183_010 Hb_003183_010 Hb_000905_050--Hb_003183_010 Hb_000914_010 Hb_000914_010 Hb_000905_050--Hb_000914_010 Hb_001102_120--Hb_028872_020 Hb_001102_120--Hb_003183_010 Hb_003186_050 Hb_003186_050 Hb_001102_120--Hb_003186_050 Hb_167457_010 Hb_167457_010 Hb_001102_120--Hb_167457_010 Hb_011476_010 Hb_011476_010 Hb_001102_120--Hb_011476_010 Hb_027969_010 Hb_027969_010 Hb_116701_030--Hb_027969_010 Hb_000029_220 Hb_000029_220 Hb_116701_030--Hb_000029_220 Hb_116701_030--Hb_000914_010 Hb_051410_010 Hb_051410_010 Hb_116701_030--Hb_051410_010 Hb_005676_020 Hb_005676_020 Hb_116701_030--Hb_005676_020 Hb_024248_010 Hb_024248_010 Hb_116701_030--Hb_024248_010 Hb_001221_350 Hb_001221_350 Hb_028872_020--Hb_001221_350 Hb_003462_170 Hb_003462_170 Hb_028872_020--Hb_003462_170 Hb_028872_020--Hb_003183_010 Hb_094484_010 Hb_094484_010 Hb_028872_020--Hb_094484_010 Hb_062192_050 Hb_062192_050 Hb_028872_020--Hb_062192_050 Hb_003427_040 Hb_003427_040 Hb_028872_020--Hb_003427_040 Hb_006483_120 Hb_006483_120 Hb_129420_010--Hb_006483_120 Hb_169948_010 Hb_169948_010 Hb_129420_010--Hb_169948_010 Hb_114271_010 Hb_114271_010 Hb_129420_010--Hb_114271_010 Hb_010620_030 Hb_010620_030 Hb_129420_010--Hb_010620_030 Hb_000552_010 Hb_000552_010 Hb_129420_010--Hb_000552_010 Hb_042463_010 Hb_042463_010 Hb_129420_010--Hb_042463_010 Hb_129046_010 Hb_129046_010 Hb_003183_010--Hb_129046_010 Hb_003183_010--Hb_001221_350 Hb_002631_270 Hb_002631_270 Hb_003183_010--Hb_002631_270 Hb_002447_100 Hb_002447_100 Hb_003183_010--Hb_002447_100 Hb_155423_010 Hb_155423_010 Hb_003183_010--Hb_155423_010 Hb_000914_010--Hb_051410_010 Hb_000649_090 Hb_000649_090 Hb_000914_010--Hb_000649_090 Hb_000914_010--Hb_011476_010 Hb_004274_010 Hb_004274_010 Hb_000914_010--Hb_004274_010 Hb_010721_040 Hb_010721_040 Hb_000914_010--Hb_010721_040 Hb_000914_010--Hb_000029_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0219108 0 0 0.0376799 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0158671 0.0807791

CAGE analysis