Hb_028872_020

Information

Type -
Description -
Location Contig28872: 15676-17947
Sequence    

Annotation

kegg
ID sot:102582478
description uncharacterized LOC102582478
nr
ID XP_012066659.1
description PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L1T8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00233 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028872_020 0.0 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
2 Hb_001221_350 0.1502714984 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003462_170 0.1860777097 - - unnamed protein product [Vitis vinifera]
4 Hb_003183_010 0.1867697425 - - PREDICTED: uncharacterized protein LOC105785048, partial [Gossypium raimondii]
5 Hb_094484_010 0.1913741423 - - kinase, putative [Ricinus communis]
6 Hb_062192_050 0.2001557401 - - -
7 Hb_003427_040 0.2027388339 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
8 Hb_009826_010 0.2029670019 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_005843_060 0.2051899392 - - PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X3 [Nelumbo nucifera]
10 Hb_001452_150 0.2062053277 - - PREDICTED: uncharacterized protein LOC104879858 [Vitis vinifera]
11 Hb_001981_020 0.2075092564 - - PREDICTED: xanthine dehydrogenase 1-like isoform X1 [Populus euphratica]
12 Hb_004274_010 0.2108525555 - - PREDICTED: uncharacterized protein LOC104451199 [Eucalyptus grandis]
13 Hb_001102_120 0.2118593901 - - -
14 Hb_057716_010 0.2138060905 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
15 Hb_000567_270 0.2152200546 - - hypothetical protein L484_017162 [Morus notabilis]
16 Hb_125116_020 0.2154253106 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X5 [Populus euphratica]
17 Hb_000907_050 0.215803566 - - -
18 Hb_000644_020 0.2167268037 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
19 Hb_010964_030 0.2169689754 - - PREDICTED: uncharacterized protein LOC105647958 [Jatropha curcas]
20 Hb_024248_010 0.2197508768 - - PREDICTED: uncharacterized protein LOC105779006 [Gossypium raimondii]

Gene co-expression network

sample Hb_028872_020 Hb_028872_020 Hb_001221_350 Hb_001221_350 Hb_028872_020--Hb_001221_350 Hb_003462_170 Hb_003462_170 Hb_028872_020--Hb_003462_170 Hb_003183_010 Hb_003183_010 Hb_028872_020--Hb_003183_010 Hb_094484_010 Hb_094484_010 Hb_028872_020--Hb_094484_010 Hb_062192_050 Hb_062192_050 Hb_028872_020--Hb_062192_050 Hb_003427_040 Hb_003427_040 Hb_028872_020--Hb_003427_040 Hb_032016_010 Hb_032016_010 Hb_001221_350--Hb_032016_010 Hb_001221_350--Hb_003183_010 Hb_007533_050 Hb_007533_050 Hb_001221_350--Hb_007533_050 Hb_003073_030 Hb_003073_030 Hb_001221_350--Hb_003073_030 Hb_009851_090 Hb_009851_090 Hb_001221_350--Hb_009851_090 Hb_001699_020 Hb_001699_020 Hb_003462_170--Hb_001699_020 Hb_005843_060 Hb_005843_060 Hb_003462_170--Hb_005843_060 Hb_125116_020 Hb_125116_020 Hb_003462_170--Hb_125116_020 Hb_006455_020 Hb_006455_020 Hb_003462_170--Hb_006455_020 Hb_001981_020 Hb_001981_020 Hb_003462_170--Hb_001981_020 Hb_000644_020 Hb_000644_020 Hb_003462_170--Hb_000644_020 Hb_129046_010 Hb_129046_010 Hb_003183_010--Hb_129046_010 Hb_002631_270 Hb_002631_270 Hb_003183_010--Hb_002631_270 Hb_002447_100 Hb_002447_100 Hb_003183_010--Hb_002447_100 Hb_155423_010 Hb_155423_010 Hb_003183_010--Hb_155423_010 Hb_010721_040 Hb_010721_040 Hb_094484_010--Hb_010721_040 Hb_102761_010 Hb_102761_010 Hb_094484_010--Hb_102761_010 Hb_025161_030 Hb_025161_030 Hb_094484_010--Hb_025161_030 Hb_000415_080 Hb_000415_080 Hb_094484_010--Hb_000415_080 Hb_004274_010 Hb_004274_010 Hb_094484_010--Hb_004274_010 Hb_001452_150 Hb_001452_150 Hb_094484_010--Hb_001452_150 Hb_057716_010 Hb_057716_010 Hb_062192_050--Hb_057716_010 Hb_001401_030 Hb_001401_030 Hb_062192_050--Hb_001401_030 Hb_000907_050 Hb_000907_050 Hb_062192_050--Hb_000907_050 Hb_003772_010 Hb_003772_010 Hb_062192_050--Hb_003772_010 Hb_024248_010 Hb_024248_010 Hb_062192_050--Hb_024248_010 Hb_005676_020 Hb_005676_020 Hb_062192_050--Hb_005676_020 Hb_009826_010 Hb_009826_010 Hb_003427_040--Hb_009826_010 Hb_003427_040--Hb_001452_150 Hb_003427_040--Hb_004274_010 Hb_003427_040--Hb_024248_010 Hb_000029_220 Hb_000029_220 Hb_003427_040--Hb_000029_220 Hb_011476_010 Hb_011476_010 Hb_003427_040--Hb_011476_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0508753 0 0.0190989 0.0867037 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.14815 0.651778

CAGE analysis