Hb_001221_350

Information

Type -
Description -
Location Contig1221: 244983-251110
Sequence    

Annotation

kegg
ID rcu:RCOM_1505840
description hypothetical protein
nr
ID XP_002511170.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RAE5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1505840 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06745: 250677-250895 , PASA_asmbl_06746: 251063-251523
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001221_350 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_032016_010 0.1462632932 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040-like isoform X1 [Citrus sinensis]
3 Hb_028872_020 0.1502714984 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
4 Hb_003183_010 0.1532024664 - - PREDICTED: uncharacterized protein LOC105785048, partial [Gossypium raimondii]
5 Hb_007533_050 0.1610058809 - - -
6 Hb_003073_030 0.1661049422 - - conserved hypothetical protein [Ricinus communis]
7 Hb_009851_090 0.1684244536 - - Protein ABIL2, putative [Ricinus communis]
8 Hb_003311_020 0.1695047679 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002631_270 0.1706226527 transcription factor TF Family: MYB hypothetical protein POPTR_0005s09930g [Populus trichocarpa]
10 Hb_000567_270 0.1729109852 - - hypothetical protein L484_017162 [Morus notabilis]
11 Hb_040245_010 0.1771354223 - - hypothetical protein CISIN_1g039575mg, partial [Citrus sinensis]
12 Hb_000644_020 0.1812331551 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
13 Hb_000100_110 0.1842115215 - - -
14 Hb_000415_080 0.1852125339 - - -
15 Hb_005092_070 0.1877167717 - - Oligopeptide transporter, putative [Ricinus communis]
16 Hb_127552_050 0.1919944264 - - hypothetical protein VITISV_030752 [Vitis vinifera]
17 Hb_062192_020 0.1924165895 - - cytochrome c biogenesis FN (mitochondrion) [Hevea brasiliensis]
18 Hb_003994_070 0.1970041034 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
19 Hb_006455_020 0.1972701885 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
20 Hb_155423_010 0.1982875095 - - -

Gene co-expression network

sample Hb_001221_350 Hb_001221_350 Hb_032016_010 Hb_032016_010 Hb_001221_350--Hb_032016_010 Hb_028872_020 Hb_028872_020 Hb_001221_350--Hb_028872_020 Hb_003183_010 Hb_003183_010 Hb_001221_350--Hb_003183_010 Hb_007533_050 Hb_007533_050 Hb_001221_350--Hb_007533_050 Hb_003073_030 Hb_003073_030 Hb_001221_350--Hb_003073_030 Hb_009851_090 Hb_009851_090 Hb_001221_350--Hb_009851_090 Hb_032016_010--Hb_007533_050 Hb_032016_010--Hb_009851_090 Hb_003311_020 Hb_003311_020 Hb_032016_010--Hb_003311_020 Hb_032016_010--Hb_003073_030 Hb_040245_010 Hb_040245_010 Hb_032016_010--Hb_040245_010 Hb_000567_270 Hb_000567_270 Hb_032016_010--Hb_000567_270 Hb_003462_170 Hb_003462_170 Hb_028872_020--Hb_003462_170 Hb_028872_020--Hb_003183_010 Hb_094484_010 Hb_094484_010 Hb_028872_020--Hb_094484_010 Hb_062192_050 Hb_062192_050 Hb_028872_020--Hb_062192_050 Hb_003427_040 Hb_003427_040 Hb_028872_020--Hb_003427_040 Hb_129046_010 Hb_129046_010 Hb_003183_010--Hb_129046_010 Hb_002631_270 Hb_002631_270 Hb_003183_010--Hb_002631_270 Hb_002447_100 Hb_002447_100 Hb_003183_010--Hb_002447_100 Hb_155423_010 Hb_155423_010 Hb_003183_010--Hb_155423_010 Hb_000432_020 Hb_000432_020 Hb_007533_050--Hb_000432_020 Hb_007533_050--Hb_003311_020 Hb_007533_050--Hb_000567_270 Hb_049285_010 Hb_049285_010 Hb_007533_050--Hb_049285_010 Hb_006455_020 Hb_006455_020 Hb_007533_050--Hb_006455_020 Hb_003073_030--Hb_040245_010 Hb_014510_030 Hb_014510_030 Hb_003073_030--Hb_014510_030 Hb_000415_080 Hb_000415_080 Hb_003073_030--Hb_000415_080 Hb_000199_090 Hb_000199_090 Hb_003073_030--Hb_000199_090 Hb_077151_010 Hb_077151_010 Hb_003073_030--Hb_077151_010 Hb_000627_110 Hb_000627_110 Hb_003073_030--Hb_000627_110 Hb_003994_070 Hb_003994_070 Hb_009851_090--Hb_003994_070 Hb_009851_090--Hb_003311_020 Hb_009851_090--Hb_155423_010 Hb_009851_090--Hb_002631_270 Hb_009851_090--Hb_000567_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.04437 0.03571 0.0282336 0.0941839 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.103939 0.757491

CAGE analysis