Hb_019516_090

Information

Type -
Description -
Location Contig19516: 68598-69044
Sequence    

Annotation

kegg
ID pop:POPTR_0004s06350g
description POPTRDRAFT_647799; hypothetical protein
nr
ID XP_002305706.1
description hypothetical protein POPTR_0004s06350g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9H2B8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s06350g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019516_090 0.0 - - hypothetical protein POPTR_0004s06350g [Populus trichocarpa]
2 Hb_011380_020 0.2548458452 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X4 [Populus euphratica]
3 Hb_000258_150 0.2673965923 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 11-like [Jatropha curcas]
4 Hb_000122_120 0.2742186941 - - PREDICTED: arogenate dehydrogenase 1, chloroplastic-like [Jatropha curcas]
5 Hb_022174_010 0.2900300549 - - elicitor-responsive protein [Hevea brasiliensis]
6 Hb_004680_080 0.2915233588 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
7 Hb_000138_050 0.2933700851 transcription factor TF Family: HB Homeobox-leucine zipper protein HAT14, putative [Ricinus communis]
8 Hb_000300_690 0.2962420074 - - hypothetical protein JCGZ_02719 [Jatropha curcas]
9 Hb_006132_070 0.2981785576 - - phosphate transporter [Manihot esculenta]
10 Hb_001606_060 0.3021052754 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004007_160 0.3024695793 - - PREDICTED: formin-like protein 6 [Jatropha curcas]
12 Hb_000069_670 0.3032465946 - - PREDICTED: uncharacterized protein LOC105642887 [Jatropha curcas]
13 Hb_005433_010 0.308263717 - - PREDICTED: 66 kDa stress protein-like [Jatropha curcas]
14 Hb_000540_050 0.3090613165 - - PREDICTED: 125 kDa kinesin-related protein-like [Jatropha curcas]
15 Hb_000135_030 0.3098731044 - - PREDICTED: uncharacterized protein LOC105634729 isoform X1 [Jatropha curcas]
16 Hb_000096_080 0.3102995033 - - PREDICTED: putative glycosyltransferase 7 [Jatropha curcas]
17 Hb_000155_060 0.3134641598 - - ATP binding protein, putative [Ricinus communis]
18 Hb_114310_110 0.3135608054 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
19 Hb_000072_070 0.3207204309 rubber biosynthesis Gene Name: Farnesyl diphosphate synthase farnesyl diphosphate synthase [Hevea brasiliensis]
20 Hb_054865_060 0.3214596612 - - PREDICTED: rho GTPase-activating protein 3-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_019516_090 Hb_019516_090 Hb_011380_020 Hb_011380_020 Hb_019516_090--Hb_011380_020 Hb_000258_150 Hb_000258_150 Hb_019516_090--Hb_000258_150 Hb_000122_120 Hb_000122_120 Hb_019516_090--Hb_000122_120 Hb_022174_010 Hb_022174_010 Hb_019516_090--Hb_022174_010 Hb_004680_080 Hb_004680_080 Hb_019516_090--Hb_004680_080 Hb_000138_050 Hb_000138_050 Hb_019516_090--Hb_000138_050 Hb_000072_070 Hb_000072_070 Hb_011380_020--Hb_000072_070 Hb_011380_020--Hb_004680_080 Hb_000575_030 Hb_000575_030 Hb_011380_020--Hb_000575_030 Hb_000317_490 Hb_000317_490 Hb_011380_020--Hb_000317_490 Hb_011316_100 Hb_011316_100 Hb_011380_020--Hb_011316_100 Hb_008062_040 Hb_008062_040 Hb_011380_020--Hb_008062_040 Hb_010560_060 Hb_010560_060 Hb_000258_150--Hb_010560_060 Hb_000258_150--Hb_022174_010 Hb_003654_010 Hb_003654_010 Hb_000258_150--Hb_003654_010 Hb_000365_260 Hb_000365_260 Hb_000258_150--Hb_000365_260 Hb_004007_160 Hb_004007_160 Hb_000258_150--Hb_004007_160 Hb_000098_020 Hb_000098_020 Hb_000258_150--Hb_000098_020 Hb_010175_010 Hb_010175_010 Hb_000122_120--Hb_010175_010 Hb_006154_020 Hb_006154_020 Hb_000122_120--Hb_006154_020 Hb_113084_010 Hb_113084_010 Hb_000122_120--Hb_113084_010 Hb_000668_090 Hb_000668_090 Hb_000122_120--Hb_000668_090 Hb_058620_060 Hb_058620_060 Hb_000122_120--Hb_058620_060 Hb_013399_080 Hb_013399_080 Hb_022174_010--Hb_013399_080 Hb_000069_670 Hb_000069_670 Hb_022174_010--Hb_000069_670 Hb_000096_080 Hb_000096_080 Hb_022174_010--Hb_000096_080 Hb_145655_010 Hb_145655_010 Hb_022174_010--Hb_145655_010 Hb_000207_100 Hb_000207_100 Hb_022174_010--Hb_000207_100 Hb_006132_070 Hb_006132_070 Hb_004680_080--Hb_006132_070 Hb_004680_080--Hb_008062_040 Hb_001085_050 Hb_001085_050 Hb_004680_080--Hb_001085_050 Hb_000005_180 Hb_000005_180 Hb_004680_080--Hb_000005_180 Hb_002836_120 Hb_002836_120 Hb_004680_080--Hb_002836_120 Hb_004680_080--Hb_000575_030 Hb_000261_330 Hb_000261_330 Hb_000138_050--Hb_000261_330 Hb_001357_330 Hb_001357_330 Hb_000138_050--Hb_001357_330 Hb_000270_870 Hb_000270_870 Hb_000138_050--Hb_000270_870 Hb_024836_010 Hb_024836_010 Hb_000138_050--Hb_024836_010 Hb_074449_010 Hb_074449_010 Hb_000138_050--Hb_074449_010 Hb_002986_080 Hb_002986_080 Hb_000138_050--Hb_002986_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.12333 0 0.390199 0.418659 0.204251 0.0623013
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.16242 0.127577 0.210667 0 0.46394

CAGE analysis