Hb_010175_010

Information

Type -
Description -
Location Contig10175: 24215-24801
Sequence    

Annotation

kegg
ID rcu:RCOM_0338850
description hypothetical protein
nr
ID XP_002531987.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9T068
description EPIDERMAL PATTERNING FACTOR-like protein 2 OS=Arabidopsis thaliana GN=EPFL2 PE=2 SV=1
trembl
ID B9T176
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0338850 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00867: 23432-23748
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010175_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000331_540 0.2145998954 - - hypothetical protein POPTR_0015s10070g, partial [Populus trichocarpa]
3 Hb_000496_110 0.2353010739 - - PREDICTED: uncharacterized protein LOC105650214 [Jatropha curcas]
4 Hb_010098_060 0.2588173432 - - PREDICTED: BTB/POZ domain-containing protein At5g17580 [Jatropha curcas]
5 Hb_000122_120 0.2619388559 - - PREDICTED: arogenate dehydrogenase 1, chloroplastic-like [Jatropha curcas]
6 Hb_000300_410 0.2640368217 - - hypothetical protein POPTR_0013s05860g [Populus trichocarpa]
7 Hb_001541_060 0.2739422328 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000516_050 0.2751437818 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
9 Hb_000676_300 0.2774770018 - - PREDICTED: probable caffeine synthase 4 [Jatropha curcas]
10 Hb_000252_220 0.2778857583 - - PREDICTED: copper amine oxidase 1-like isoform X2 [Beta vulgaris subsp. vulgaris]
11 Hb_000107_350 0.2813780872 - - PREDICTED: uncharacterized protein LOC105635576 [Jatropha curcas]
12 Hb_002316_080 0.2816223675 - - PREDICTED: RING-H2 finger protein ATL46-like [Populus euphratica]
13 Hb_000246_130 0.2868007581 - - tubulin alpha chain, putative [Ricinus communis]
14 Hb_002157_270 0.2877812871 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
15 Hb_001989_100 0.2896831488 - - PREDICTED: uncharacterized protein LOC105636214 [Jatropha curcas]
16 Hb_007925_010 0.2940516997 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 1 [Jatropha curcas]
17 Hb_012606_010 0.2947569399 transcription factor TF Family: IWS1 PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c isoform X2 [Jatropha curcas]
18 Hb_011310_040 0.2948951052 transcription factor TF Family: bZIP transcription factor hy5, putative [Ricinus communis]
19 Hb_000099_140 0.2950806251 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
20 Hb_000077_310 0.2959229074 - - PREDICTED: clathrin light chain 1 [Jatropha curcas]

Gene co-expression network

sample Hb_010175_010 Hb_010175_010 Hb_000331_540 Hb_000331_540 Hb_010175_010--Hb_000331_540 Hb_000496_110 Hb_000496_110 Hb_010175_010--Hb_000496_110 Hb_010098_060 Hb_010098_060 Hb_010175_010--Hb_010098_060 Hb_000122_120 Hb_000122_120 Hb_010175_010--Hb_000122_120 Hb_000300_410 Hb_000300_410 Hb_010175_010--Hb_000300_410 Hb_001541_060 Hb_001541_060 Hb_010175_010--Hb_001541_060 Hb_000002_250 Hb_000002_250 Hb_000331_540--Hb_000002_250 Hb_001143_230 Hb_001143_230 Hb_000331_540--Hb_001143_230 Hb_000997_380 Hb_000997_380 Hb_000331_540--Hb_000997_380 Hb_001005_200 Hb_001005_200 Hb_000331_540--Hb_001005_200 Hb_000236_160 Hb_000236_160 Hb_000331_540--Hb_000236_160 Hb_002316_080 Hb_002316_080 Hb_000496_110--Hb_002316_080 Hb_000246_130 Hb_000246_130 Hb_000496_110--Hb_000246_130 Hb_000496_110--Hb_000300_410 Hb_001989_100 Hb_001989_100 Hb_000496_110--Hb_001989_100 Hb_011310_040 Hb_011310_040 Hb_000496_110--Hb_011310_040 Hb_000107_350 Hb_000107_350 Hb_000496_110--Hb_000107_350 Hb_003462_080 Hb_003462_080 Hb_010098_060--Hb_003462_080 Hb_001148_060 Hb_001148_060 Hb_010098_060--Hb_001148_060 Hb_001864_080 Hb_001864_080 Hb_010098_060--Hb_001864_080 Hb_010098_060--Hb_000246_130 Hb_000221_090 Hb_000221_090 Hb_010098_060--Hb_000221_090 Hb_116702_010 Hb_116702_010 Hb_010098_060--Hb_116702_010 Hb_006154_020 Hb_006154_020 Hb_000122_120--Hb_006154_020 Hb_113084_010 Hb_113084_010 Hb_000122_120--Hb_113084_010 Hb_000668_090 Hb_000668_090 Hb_000122_120--Hb_000668_090 Hb_058620_060 Hb_058620_060 Hb_000122_120--Hb_058620_060 Hb_019516_090 Hb_019516_090 Hb_000122_120--Hb_019516_090 Hb_000300_410--Hb_001989_100 Hb_002157_270 Hb_002157_270 Hb_000300_410--Hb_002157_270 Hb_012707_010 Hb_012707_010 Hb_000300_410--Hb_012707_010 Hb_015675_030 Hb_015675_030 Hb_000300_410--Hb_015675_030 Hb_000950_030 Hb_000950_030 Hb_000300_410--Hb_000950_030 Hb_000300_410--Hb_011310_040 Hb_000108_180 Hb_000108_180 Hb_001541_060--Hb_000108_180 Hb_150486_010 Hb_150486_010 Hb_001541_060--Hb_150486_010 Hb_000251_120 Hb_000251_120 Hb_001541_060--Hb_000251_120 Hb_001366_110 Hb_001366_110 Hb_001541_060--Hb_001366_110 Hb_003177_040 Hb_003177_040 Hb_001541_060--Hb_003177_040 Hb_000236_230 Hb_000236_230 Hb_001541_060--Hb_000236_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.793671 0 0.422665 2.44562 0.0893388 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.493245 0.261023 0.283256 1.71866

CAGE analysis