Hb_000331_540

Information

Type -
Description -
Location Contig331: 442966-444061
Sequence    

Annotation

kegg
ID pop:POPTR_0015s10070g
description POPTRDRAFT_1101558; hypothetical protein
nr
ID XP_002322218.2
description hypothetical protein POPTR_0015s10070g, partial [Populus trichocarpa]
swissprot
ID Q8GYN5
description RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1 SV=1
trembl
ID B9IF41
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0015s10070g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34810: 442899-443829
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000331_540 0.0 - - hypothetical protein POPTR_0015s10070g, partial [Populus trichocarpa]
2 Hb_010175_010 0.2145998954 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000002_250 0.2283482864 - - hypothetical protein JCGZ_02310 [Jatropha curcas]
4 Hb_001143_230 0.2637630889 - - beta-galactosidase family protein [Populus trichocarpa]
5 Hb_000997_380 0.2928669507 - - PREDICTED: armadillo repeat-containing protein LFR [Jatropha curcas]
6 Hb_001005_200 0.296969311 - - PREDICTED: receptor-like protein kinase HERK 1 isoform X2 [Jatropha curcas]
7 Hb_000236_160 0.3117521329 - - PREDICTED: UDP-glucuronate 4-epimerase 6 [Jatropha curcas]
8 Hb_000099_140 0.3184743777 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
9 Hb_001329_180 0.3228107915 - - S-adenosylmethionine synthetase 1 family protein [Populus trichocarpa]
10 Hb_002151_060 0.3232244768 - - PREDICTED: DNA-directed RNA polymerase III subunit rpc4 [Jatropha curcas]
11 Hb_001221_450 0.3236277764 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000252_220 0.3276378704 - - PREDICTED: copper amine oxidase 1-like isoform X2 [Beta vulgaris subsp. vulgaris]
13 Hb_003185_070 0.3301901546 - - Plant natriuretic peptide A [Theobroma cacao]
14 Hb_058620_060 0.3322568897 - - uncharacterized protein LOC105646159 precursor [Jatropha curcas]
15 Hb_000806_130 0.3332622873 - - Adenosine kinase 2 [Theobroma cacao]
16 Hb_000950_030 0.3346021938 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g10290 [Nelumbo nucifera]
17 Hb_000077_100 0.3354866715 - - PREDICTED: mannan endo-1,4-beta-mannosidase 2-like isoform X1 [Jatropha curcas]
18 Hb_002119_140 0.3368523762 - - PREDICTED: uncharacterized protein LOC105634172 [Jatropha curcas]
19 Hb_000676_300 0.3381946268 - - PREDICTED: probable caffeine synthase 4 [Jatropha curcas]
20 Hb_010098_060 0.3383024394 - - PREDICTED: BTB/POZ domain-containing protein At5g17580 [Jatropha curcas]

Gene co-expression network

sample Hb_000331_540 Hb_000331_540 Hb_010175_010 Hb_010175_010 Hb_000331_540--Hb_010175_010 Hb_000002_250 Hb_000002_250 Hb_000331_540--Hb_000002_250 Hb_001143_230 Hb_001143_230 Hb_000331_540--Hb_001143_230 Hb_000997_380 Hb_000997_380 Hb_000331_540--Hb_000997_380 Hb_001005_200 Hb_001005_200 Hb_000331_540--Hb_001005_200 Hb_000236_160 Hb_000236_160 Hb_000331_540--Hb_000236_160 Hb_000496_110 Hb_000496_110 Hb_010175_010--Hb_000496_110 Hb_010098_060 Hb_010098_060 Hb_010175_010--Hb_010098_060 Hb_000122_120 Hb_000122_120 Hb_010175_010--Hb_000122_120 Hb_000300_410 Hb_000300_410 Hb_010175_010--Hb_000300_410 Hb_001541_060 Hb_001541_060 Hb_010175_010--Hb_001541_060 Hb_003185_070 Hb_003185_070 Hb_000002_250--Hb_003185_070 Hb_000002_250--Hb_001143_230 Hb_000002_250--Hb_001005_200 Hb_003554_040 Hb_003554_040 Hb_000002_250--Hb_003554_040 Hb_000002_250--Hb_010175_010 Hb_005144_170 Hb_005144_170 Hb_001143_230--Hb_005144_170 Hb_004117_330 Hb_004117_330 Hb_001143_230--Hb_004117_330 Hb_002602_030 Hb_002602_030 Hb_001143_230--Hb_002602_030 Hb_001143_230--Hb_001005_200 Hb_000413_080 Hb_000413_080 Hb_001143_230--Hb_000413_080 Hb_001143_230--Hb_000997_380 Hb_017002_010 Hb_017002_010 Hb_000997_380--Hb_017002_010 Hb_004525_050 Hb_004525_050 Hb_000997_380--Hb_004525_050 Hb_000997_380--Hb_005144_170 Hb_001449_030 Hb_001449_030 Hb_000997_380--Hb_001449_030 Hb_010984_040 Hb_010984_040 Hb_000997_380--Hb_010984_040 Hb_006634_110 Hb_006634_110 Hb_000997_380--Hb_006634_110 Hb_004126_040 Hb_004126_040 Hb_001005_200--Hb_004126_040 Hb_014497_040 Hb_014497_040 Hb_001005_200--Hb_014497_040 Hb_000003_310 Hb_000003_310 Hb_001005_200--Hb_000003_310 Hb_001005_200--Hb_000236_160 Hb_000622_350 Hb_000622_350 Hb_001005_200--Hb_000622_350 Hb_000926_340 Hb_000926_340 Hb_001005_200--Hb_000926_340 Hb_000684_220 Hb_000684_220 Hb_000236_160--Hb_000684_220 Hb_002774_120 Hb_002774_120 Hb_000236_160--Hb_002774_120 Hb_003929_190 Hb_003929_190 Hb_000236_160--Hb_003929_190 Hb_000012_400 Hb_000012_400 Hb_000236_160--Hb_000012_400 Hb_010812_110 Hb_010812_110 Hb_000236_160--Hb_010812_110 Hb_030565_050 Hb_030565_050 Hb_000236_160--Hb_030565_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.283842 0 0.0929364 0.855879 0.108743 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.200484 0 0.177155 0.336323

CAGE analysis