Hb_000002_250

Information

Type -
Description -
Location Contig2: 394634-396512
Sequence    

Annotation

kegg
ID pop:POPTR_0008s16550g
description hypothetical protein
nr
ID KDP40312.1
description hypothetical protein JCGZ_02310 [Jatropha curcas]
swissprot
ID Q9FL41
description WAT1-related protein At5g07050 OS=Arabidopsis thaliana GN=At5g07050 PE=2 SV=1
trembl
ID A0A067KW03
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02310 PE=4 SV=1
Gene Ontology
ID GO:0016020
description wat1-related protein at5g07050-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20083: 394653-394961 , PASA_asmbl_20084: 395697-396395
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000002_250 0.0 - - hypothetical protein JCGZ_02310 [Jatropha curcas]
2 Hb_000331_540 0.2283482864 - - hypothetical protein POPTR_0015s10070g, partial [Populus trichocarpa]
3 Hb_003185_070 0.2925158464 - - Plant natriuretic peptide A [Theobroma cacao]
4 Hb_001143_230 0.3277740119 - - beta-galactosidase family protein [Populus trichocarpa]
5 Hb_001005_200 0.3279813867 - - PREDICTED: receptor-like protein kinase HERK 1 isoform X2 [Jatropha curcas]
6 Hb_003554_040 0.3308929745 - - -
7 Hb_010175_010 0.3313222036 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002760_050 0.3317684583 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002110_290 0.3339115105 - - ring finger protein, putative [Ricinus communis]
10 Hb_005914_130 0.3399085156 - - -
11 Hb_002759_090 0.3417315091 - - -
12 Hb_004586_410 0.3433994286 - - ring finger protein, putative [Ricinus communis]
13 Hb_010457_040 0.343768564 - - PREDICTED: uncharacterized protein LOC101491058 [Cicer arietinum]
14 Hb_003623_040 0.3450087599 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
15 Hb_017434_080 0.3451798648 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001214_040 0.3486460791 - - PREDICTED: protein trichome birefringence-like 3 [Jatropha curcas]
17 Hb_000236_230 0.3489360393 - - PREDICTED: E3 ubiquitin-protein ligase At4g11680 isoform X2 [Jatropha curcas]
18 Hb_002151_060 0.3506540931 - - PREDICTED: DNA-directed RNA polymerase III subunit rpc4 [Jatropha curcas]
19 Hb_000176_080 0.351651324 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g30520 [Jatropha curcas]
20 Hb_001541_060 0.3579501068 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000002_250 Hb_000002_250 Hb_000331_540 Hb_000331_540 Hb_000002_250--Hb_000331_540 Hb_003185_070 Hb_003185_070 Hb_000002_250--Hb_003185_070 Hb_001143_230 Hb_001143_230 Hb_000002_250--Hb_001143_230 Hb_001005_200 Hb_001005_200 Hb_000002_250--Hb_001005_200 Hb_003554_040 Hb_003554_040 Hb_000002_250--Hb_003554_040 Hb_010175_010 Hb_010175_010 Hb_000002_250--Hb_010175_010 Hb_000331_540--Hb_010175_010 Hb_000331_540--Hb_001143_230 Hb_000997_380 Hb_000997_380 Hb_000331_540--Hb_000997_380 Hb_000331_540--Hb_001005_200 Hb_000236_160 Hb_000236_160 Hb_000331_540--Hb_000236_160 Hb_002110_290 Hb_002110_290 Hb_003185_070--Hb_002110_290 Hb_001186_110 Hb_001186_110 Hb_003185_070--Hb_001186_110 Hb_000054_010 Hb_000054_010 Hb_003185_070--Hb_000054_010 Hb_000300_420 Hb_000300_420 Hb_003185_070--Hb_000300_420 Hb_000455_070 Hb_000455_070 Hb_003185_070--Hb_000455_070 Hb_000236_190 Hb_000236_190 Hb_003185_070--Hb_000236_190 Hb_005144_170 Hb_005144_170 Hb_001143_230--Hb_005144_170 Hb_004117_330 Hb_004117_330 Hb_001143_230--Hb_004117_330 Hb_002602_030 Hb_002602_030 Hb_001143_230--Hb_002602_030 Hb_001143_230--Hb_001005_200 Hb_000413_080 Hb_000413_080 Hb_001143_230--Hb_000413_080 Hb_001143_230--Hb_000997_380 Hb_004126_040 Hb_004126_040 Hb_001005_200--Hb_004126_040 Hb_014497_040 Hb_014497_040 Hb_001005_200--Hb_014497_040 Hb_000003_310 Hb_000003_310 Hb_001005_200--Hb_000003_310 Hb_001005_200--Hb_000236_160 Hb_000622_350 Hb_000622_350 Hb_001005_200--Hb_000622_350 Hb_000926_340 Hb_000926_340 Hb_001005_200--Hb_000926_340 Hb_000780_180 Hb_000780_180 Hb_003554_040--Hb_000780_180 Hb_000176_080 Hb_000176_080 Hb_003554_040--Hb_000176_080 Hb_000030_130 Hb_000030_130 Hb_003554_040--Hb_000030_130 Hb_000137_050 Hb_000137_050 Hb_003554_040--Hb_000137_050 Hb_002894_080 Hb_002894_080 Hb_003554_040--Hb_002894_080 Hb_005183_130 Hb_005183_130 Hb_003554_040--Hb_005183_130 Hb_000496_110 Hb_000496_110 Hb_010175_010--Hb_000496_110 Hb_010098_060 Hb_010098_060 Hb_010175_010--Hb_010098_060 Hb_000122_120 Hb_000122_120 Hb_010175_010--Hb_000122_120 Hb_000300_410 Hb_000300_410 Hb_010175_010--Hb_000300_410 Hb_001541_060 Hb_001541_060 Hb_010175_010--Hb_001541_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0665732 0.017056 0 0.406981 0.0987102 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0737476 0 0.0444211 0.151524

CAGE analysis