Hb_004954_020

Information

Type -
Description -
Location Contig4954: 8540-13151
Sequence    

Annotation

kegg
ID pop:POPTR_0007s04020g
description POPTRDRAFT_718566; pectinesterase family protein
nr
ID XP_012087640.1
description PREDICTED: probable pectinesterase/pectinesterase inhibitor 51 isoform X2 [Jatropha curcas]
swissprot
ID Q9LXD9
description Probable pectinesterase/pectinesterase inhibitor 51 OS=Arabidopsis thaliana GN=PME51 PE=2 SV=1
trembl
ID B9HEQ8
description Pectinesterase family protein OS=Populus trichocarpa GN=POPTR_0007s04020g PE=3 SV=2
Gene Ontology
ID GO:0005618
description probable pectinesterase pectinesterase inhibitor 51

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004954_020 0.0 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 51 isoform X2 [Jatropha curcas]
2 Hb_004108_190 0.2120198476 - - PREDICTED: protein catecholamines up-like [Jatropha curcas]
3 Hb_114271_010 0.2346085828 - - hypothetical protein JCGZ_19461 [Jatropha curcas]
4 Hb_001148_060 0.2386221993 - - hypothetical protein JCGZ_00278 [Jatropha curcas]
5 Hb_014361_030 0.2386634335 - - hypothetical protein POPTR_0005s18860g [Populus trichocarpa]
6 Hb_002542_060 0.2431333072 - - PREDICTED: wee1-like protein kinase [Jatropha curcas]
7 Hb_011994_070 0.2513485455 - - PREDICTED: ras-related protein RABC2a-like isoform X2 [Jatropha curcas]
8 Hb_000122_260 0.2599464698 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 1-like [Jatropha curcas]
9 Hb_004242_090 0.2602554577 - - hypothetical protein JCGZ_00767 [Jatropha curcas]
10 Hb_000840_260 0.2613695181 transcription factor TF Family: GRAS hypothetical protein POPTR_0019s02540g [Populus trichocarpa]
11 Hb_000370_040 0.2662033387 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
12 Hb_002836_040 0.2683861617 - - Auxin-induced protein 5NG4 [Glycine soja]
13 Hb_010098_060 0.268671867 - - PREDICTED: BTB/POZ domain-containing protein At5g17580 [Jatropha curcas]
14 Hb_001017_130 0.2708325079 - - hypothetical protein POPTR_0010s06070g [Populus trichocarpa]
15 Hb_000370_070 0.2744802955 - - PREDICTED: subtilisin-like protease-like [Citrus sinensis]
16 Hb_003333_040 0.2744816443 - - ankyrin repeat-containing protein, putative [Ricinus communis]
17 Hb_019333_010 0.2766889887 - - PREDICTED: uncharacterized protein LOC105633210 [Jatropha curcas]
18 Hb_000270_830 0.2782120271 - - aldehyde dehydrogenase, putative [Ricinus communis]
19 Hb_172632_130 0.2798376769 - - hypothetical protein JCGZ_22584 [Jatropha curcas]
20 Hb_001278_020 0.2845083846 - - sucrose synthase 6 [Hevea brasiliensis]

Gene co-expression network

sample Hb_004954_020 Hb_004954_020 Hb_004108_190 Hb_004108_190 Hb_004954_020--Hb_004108_190 Hb_114271_010 Hb_114271_010 Hb_004954_020--Hb_114271_010 Hb_001148_060 Hb_001148_060 Hb_004954_020--Hb_001148_060 Hb_014361_030 Hb_014361_030 Hb_004954_020--Hb_014361_030 Hb_002542_060 Hb_002542_060 Hb_004954_020--Hb_002542_060 Hb_011994_070 Hb_011994_070 Hb_004954_020--Hb_011994_070 Hb_002028_280 Hb_002028_280 Hb_004108_190--Hb_002028_280 Hb_004108_190--Hb_114271_010 Hb_000215_230 Hb_000215_230 Hb_004108_190--Hb_000215_230 Hb_024066_040 Hb_024066_040 Hb_004108_190--Hb_024066_040 Hb_000392_210 Hb_000392_210 Hb_004108_190--Hb_000392_210 Hb_032260_110 Hb_032260_110 Hb_114271_010--Hb_032260_110 Hb_032733_020 Hb_032733_020 Hb_114271_010--Hb_032733_020 Hb_129420_010 Hb_129420_010 Hb_114271_010--Hb_129420_010 Hb_013420_060 Hb_013420_060 Hb_114271_010--Hb_013420_060 Hb_002005_050 Hb_002005_050 Hb_114271_010--Hb_002005_050 Hb_002759_100 Hb_002759_100 Hb_001148_060--Hb_002759_100 Hb_005305_120 Hb_005305_120 Hb_001148_060--Hb_005305_120 Hb_172632_130 Hb_172632_130 Hb_001148_060--Hb_172632_130 Hb_021409_070 Hb_021409_070 Hb_001148_060--Hb_021409_070 Hb_000270_830 Hb_000270_830 Hb_001148_060--Hb_000270_830 Hb_007793_050 Hb_007793_050 Hb_001148_060--Hb_007793_050 Hb_000120_990 Hb_000120_990 Hb_014361_030--Hb_000120_990 Hb_000172_380 Hb_000172_380 Hb_014361_030--Hb_000172_380 Hb_000390_190 Hb_000390_190 Hb_014361_030--Hb_000390_190 Hb_003641_030 Hb_003641_030 Hb_014361_030--Hb_003641_030 Hb_000320_340 Hb_000320_340 Hb_014361_030--Hb_000320_340 Hb_000521_090 Hb_000521_090 Hb_014361_030--Hb_000521_090 Hb_003006_090 Hb_003006_090 Hb_002542_060--Hb_003006_090 Hb_000099_170 Hb_000099_170 Hb_002542_060--Hb_000099_170 Hb_000357_070 Hb_000357_070 Hb_002542_060--Hb_000357_070 Hb_001017_130 Hb_001017_130 Hb_002542_060--Hb_001017_130 Hb_000805_010 Hb_000805_010 Hb_002542_060--Hb_000805_010 Hb_001153_100 Hb_001153_100 Hb_002542_060--Hb_001153_100 Hb_010417_130 Hb_010417_130 Hb_011994_070--Hb_010417_130 Hb_011994_070--Hb_000270_830 Hb_000084_140 Hb_000084_140 Hb_011994_070--Hb_000084_140 Hb_001195_250 Hb_001195_250 Hb_011994_070--Hb_001195_250 Hb_106070_010 Hb_106070_010 Hb_011994_070--Hb_106070_010 Hb_000042_060 Hb_000042_060 Hb_011994_070--Hb_000042_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.831303 0.253421 0.470944 0.870476 0.0302708 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0734152 0.0144422 0.110048 0.0401559 1.41099

CAGE analysis