Hb_007508_050

Information

Type -
Description -
Location Contig7508: 45392-50667
Sequence    

Annotation

kegg
ID pop:POPTR_0012s06760g
description POPTRDRAFT_569934; 3-PHOSPHOSERINE PHOSPHATASE family protein
nr
ID XP_012080378.1
description PREDICTED: phosphoserine phosphatase, chloroplastic [Jatropha curcas]
swissprot
ID O82796
description Phosphoserine phosphatase, chloroplastic OS=Arabidopsis thaliana GN=PSP PE=1 SV=2
trembl
ID A0A067K5F0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11723 PE=4 SV=1
Gene Ontology
ID GO:0016791
description phosphoserine chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007508_050 0.0 - - PREDICTED: phosphoserine phosphatase, chloroplastic [Jatropha curcas]
2 Hb_000676_300 0.2340472655 - - PREDICTED: probable caffeine synthase 4 [Jatropha curcas]
3 Hb_059741_010 0.2468950315 - - PREDICTED: cellulose synthase A catalytic subunit 1 [UDP-forming] [Jatropha curcas]
4 Hb_039074_010 0.254020216 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
5 Hb_000186_170 0.265779713 - - pyrophosphate-dependent phosphofructokinase, partial [Hevea brasiliensis]
6 Hb_177343_010 0.2675955805 - - PREDICTED: uncharacterized protein LOC105650963 [Jatropha curcas]
7 Hb_000011_220 0.2689253559 - - PREDICTED: uncharacterized protein LOC105631313 [Jatropha curcas]
8 Hb_000300_520 0.2716016665 - - hypothetical protein JCGZ_02702 [Jatropha curcas]
9 Hb_003175_110 0.2735816894 - - -
10 Hb_002164_020 0.275474272 - - conserved hypothetical protein [Ricinus communis]
11 Hb_011310_050 0.2755860847 - - PREDICTED: cellulose synthase A catalytic subunit 1 [UDP-forming] [Jatropha curcas]
12 Hb_004225_110 0.2773090374 - - PREDICTED: ABC transporter G family member 28 [Jatropha curcas]
13 Hb_011021_010 0.2788875661 - - kinase, putative [Ricinus communis]
14 Hb_000184_160 0.2789055123 - - PREDICTED: uncharacterized protein LOC105647991 [Jatropha curcas]
15 Hb_003052_030 0.2794938142 - - 6-phosphogluconate dehydrogenase family protein isoform 1 [Theobroma cacao]
16 Hb_010175_030 0.2798189802 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
17 Hb_001216_110 0.2819253938 - - PREDICTED: protein GPR107-like [Jatropha curcas]
18 Hb_000679_040 0.2839610608 - - Cellulose synthase 1 [Theobroma cacao]
19 Hb_002157_270 0.2885198046 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
20 Hb_004710_010 0.2887033692 - - hypothetical protein EUGRSUZ_D010351, partial [Eucalyptus grandis]

Gene co-expression network

sample Hb_007508_050 Hb_007508_050 Hb_000676_300 Hb_000676_300 Hb_007508_050--Hb_000676_300 Hb_059741_010 Hb_059741_010 Hb_007508_050--Hb_059741_010 Hb_039074_010 Hb_039074_010 Hb_007508_050--Hb_039074_010 Hb_000186_170 Hb_000186_170 Hb_007508_050--Hb_000186_170 Hb_177343_010 Hb_177343_010 Hb_007508_050--Hb_177343_010 Hb_000011_220 Hb_000011_220 Hb_007508_050--Hb_000011_220 Hb_106552_060 Hb_106552_060 Hb_000676_300--Hb_106552_060 Hb_000742_220 Hb_000742_220 Hb_000676_300--Hb_000742_220 Hb_000300_520 Hb_000300_520 Hb_000676_300--Hb_000300_520 Hb_000236_180 Hb_000236_180 Hb_000676_300--Hb_000236_180 Hb_000417_380 Hb_000417_380 Hb_000676_300--Hb_000417_380 Hb_000077_100 Hb_000077_100 Hb_000676_300--Hb_000077_100 Hb_011310_050 Hb_011310_050 Hb_059741_010--Hb_011310_050 Hb_000679_040 Hb_000679_040 Hb_059741_010--Hb_000679_040 Hb_001216_110 Hb_001216_110 Hb_059741_010--Hb_001216_110 Hb_000244_260 Hb_000244_260 Hb_059741_010--Hb_000244_260 Hb_059741_010--Hb_177343_010 Hb_001210_040 Hb_001210_040 Hb_059741_010--Hb_001210_040 Hb_003371_190 Hb_003371_190 Hb_039074_010--Hb_003371_190 Hb_039074_010--Hb_059741_010 Hb_039074_010--Hb_000244_260 Hb_030565_110 Hb_030565_110 Hb_039074_010--Hb_030565_110 Hb_039074_010--Hb_000679_040 Hb_039074_010--Hb_011310_050 Hb_001689_040 Hb_001689_040 Hb_000186_170--Hb_001689_040 Hb_000186_170--Hb_177343_010 Hb_000613_010 Hb_000613_010 Hb_000186_170--Hb_000613_010 Hb_003124_030 Hb_003124_030 Hb_000186_170--Hb_003124_030 Hb_000172_350 Hb_000172_350 Hb_000186_170--Hb_000172_350 Hb_009486_040 Hb_009486_040 Hb_000186_170--Hb_009486_040 Hb_000270_660 Hb_000270_660 Hb_177343_010--Hb_000270_660 Hb_163145_030 Hb_163145_030 Hb_177343_010--Hb_163145_030 Hb_002164_020 Hb_002164_020 Hb_177343_010--Hb_002164_020 Hb_177343_010--Hb_011310_050 Hb_010175_030 Hb_010175_030 Hb_177343_010--Hb_010175_030 Hb_009674_050 Hb_009674_050 Hb_000011_220--Hb_009674_050 Hb_000011_220--Hb_002164_020 Hb_005348_110 Hb_005348_110 Hb_000011_220--Hb_005348_110 Hb_003746_010 Hb_003746_010 Hb_000011_220--Hb_003746_010 Hb_000011_220--Hb_010175_030 Hb_000011_220--Hb_059741_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0739274 0 0.0340779 0.262697 0.0684461 0.0400758
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0753144 0.0989305 0.167392

CAGE analysis