Hb_000116_140

Information

Type -
Description -
Location Contig116: 127890-130895
Sequence    

Annotation

kegg
ID rcu:RCOM_0873980
description dihydrodipicolinate synthase, putative (EC:4.2.1.52)
nr
ID XP_002521713.1
description dihydrodipicolinate synthase, putative [Ricinus communis]
swissprot
ID Q9FVC8
description 4-hydroxy-tetrahydrodipicolinate synthase 2, chloroplastic OS=Arabidopsis thaliana GN=DHDPS2 PE=1 SV=2
trembl
ID B9S6U4
description Dihydrodipicolinate synthase, putative OS=Ricinus communis GN=RCOM_0873980 PE=4 SV=1
Gene Ontology
ID GO:0008840
description 4-hydroxy-tetrahydrodipicolinate chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_140 0.0 - - dihydrodipicolinate synthase, putative [Ricinus communis]
2 Hb_003124_260 0.2594465325 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase AOP1 [Jatropha curcas]
3 Hb_005293_020 0.2855999814 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002217_280 0.2997175264 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002836_040 0.3092731366 - - Auxin-induced protein 5NG4 [Glycine soja]
6 Hb_001289_020 0.3124104483 - - PREDICTED: uncharacterized protein LOC105635827 [Jatropha curcas]
7 Hb_007508_050 0.3224187364 - - PREDICTED: phosphoserine phosphatase, chloroplastic [Jatropha curcas]
8 Hb_007925_010 0.3357433075 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 1 [Jatropha curcas]
9 Hb_000676_300 0.3385293063 - - PREDICTED: probable caffeine synthase 4 [Jatropha curcas]
10 Hb_000122_120 0.3410303239 - - PREDICTED: arogenate dehydrogenase 1, chloroplastic-like [Jatropha curcas]
11 Hb_019592_010 0.3481843654 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
12 Hb_000016_050 0.3484444685 - - PREDICTED: uncharacterized protein LOC105648535 [Jatropha curcas]
13 Hb_106552_060 0.349870353 - - STS14 protein precursor, putative [Ricinus communis]
14 Hb_010175_010 0.3546716469 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000300_520 0.3599678395 - - hypothetical protein JCGZ_02702 [Jatropha curcas]
16 Hb_145655_010 0.3657131556 - - PREDICTED: lactoylglutathione lyase [Jatropha curcas]
17 Hb_022174_010 0.3674614235 - - elicitor-responsive protein [Hevea brasiliensis]
18 Hb_000367_120 0.3704747925 transcription factor TF Family: C2H2 hypothetical protein RCOM_1470470 [Ricinus communis]
19 Hb_013399_080 0.3736493774 - - PREDICTED: protein Brevis radix-like 2 [Jatropha curcas]
20 Hb_105959_010 0.3738824351 - - asparagine synthetase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000116_140 Hb_000116_140 Hb_003124_260 Hb_003124_260 Hb_000116_140--Hb_003124_260 Hb_005293_020 Hb_005293_020 Hb_000116_140--Hb_005293_020 Hb_002217_280 Hb_002217_280 Hb_000116_140--Hb_002217_280 Hb_002836_040 Hb_002836_040 Hb_000116_140--Hb_002836_040 Hb_001289_020 Hb_001289_020 Hb_000116_140--Hb_001289_020 Hb_007508_050 Hb_007508_050 Hb_000116_140--Hb_007508_050 Hb_010521_030 Hb_010521_030 Hb_003124_260--Hb_010521_030 Hb_003124_260--Hb_007508_050 Hb_000094_040 Hb_000094_040 Hb_003124_260--Hb_000094_040 Hb_003073_090 Hb_003073_090 Hb_003124_260--Hb_003073_090 Hb_003688_160 Hb_003688_160 Hb_003124_260--Hb_003688_160 Hb_005293_020--Hb_002217_280 Hb_000281_060 Hb_000281_060 Hb_005293_020--Hb_000281_060 Hb_000139_110 Hb_000139_110 Hb_005293_020--Hb_000139_110 Hb_034507_040 Hb_034507_040 Hb_005293_020--Hb_034507_040 Hb_000226_070 Hb_000226_070 Hb_005293_020--Hb_000226_070 Hb_024074_020 Hb_024074_020 Hb_005293_020--Hb_024074_020 Hb_000100_060 Hb_000100_060 Hb_002217_280--Hb_000100_060 Hb_002217_280--Hb_034507_040 Hb_002217_280--Hb_000226_070 Hb_007810_090 Hb_007810_090 Hb_002217_280--Hb_007810_090 Hb_000300_520 Hb_000300_520 Hb_002217_280--Hb_000300_520 Hb_004954_020 Hb_004954_020 Hb_002836_040--Hb_004954_020 Hb_158832_010 Hb_158832_010 Hb_002836_040--Hb_158832_010 Hb_000516_050 Hb_000516_050 Hb_002836_040--Hb_000516_050 Hb_053422_010 Hb_053422_010 Hb_002836_040--Hb_053422_010 Hb_000122_120 Hb_000122_120 Hb_002836_040--Hb_000122_120 Hb_007925_010 Hb_007925_010 Hb_001289_020--Hb_007925_010 Hb_069355_010 Hb_069355_010 Hb_001289_020--Hb_069355_010 Hb_000210_100 Hb_000210_100 Hb_001289_020--Hb_000210_100 Hb_007534_060 Hb_007534_060 Hb_001289_020--Hb_007534_060 Hb_001289_020--Hb_000300_520 Hb_105959_010 Hb_105959_010 Hb_001289_020--Hb_105959_010 Hb_000676_300 Hb_000676_300 Hb_007508_050--Hb_000676_300 Hb_059741_010 Hb_059741_010 Hb_007508_050--Hb_059741_010 Hb_039074_010 Hb_039074_010 Hb_007508_050--Hb_039074_010 Hb_000186_170 Hb_000186_170 Hb_007508_050--Hb_000186_170 Hb_177343_010 Hb_177343_010 Hb_007508_050--Hb_177343_010 Hb_000011_220 Hb_000011_220 Hb_007508_050--Hb_000011_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0806853 0 0.0161082 0.158206 0.0431704 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0714254 0 0.0793954

CAGE analysis