Hb_001789_140

Information

Type -
Description -
Location Contig1789: 155337-156541
Sequence    

Annotation

kegg
ID cit:102623693
description short-chain dehydrogenase TIC 32, chloroplastic-like
nr
ID XP_006490697.1
description PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Citrus sinensis]
swissprot
ID -
description -
trembl
ID V7C4D5
description Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G112300g PE=4 SV=1
Gene Ontology
ID GO:0016491
description short-chain dehydrogenase tic chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001789_140 0.0 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Citrus sinensis]
2 Hb_002768_090 0.2295279788 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
3 Hb_002774_110 0.2332657628 - - heat shock protein binding protein, putative [Ricinus communis]
4 Hb_002284_190 0.2552095194 - - PREDICTED: glutamate receptor 3.3 [Jatropha curcas]
5 Hb_003680_140 0.2555629706 - - PREDICTED: uncharacterized protein LOC105121770 [Populus euphratica]
6 Hb_161010_010 0.275673476 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
7 Hb_006836_030 0.2768340315 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
8 Hb_001604_150 0.2777904898 - - PREDICTED: uncharacterized protein At3g15000, mitochondrial-like [Nelumbo nucifera]
9 Hb_000009_050 0.281009269 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
10 Hb_006538_190 0.2829529334 - - PREDICTED: homocysteine S-methyltransferase 1 isoform X1 [Jatropha curcas]
11 Hb_002783_110 0.2850338663 - - Zeamatin precursor, putative [Ricinus communis]
12 Hb_029385_010 0.2860363472 - - CTP synthase family protein [Populus trichocarpa]
13 Hb_005227_040 0.2863935574 transcription factor TF Family: HB unnamed protein product [Vitis vinifera]
14 Hb_001975_040 0.2866072424 rubber biosynthesis Gene Name: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase [Hevea brasiliensis]
15 Hb_000364_160 0.2868452991 - - PREDICTED: uncharacterized protein LOC105639754 [Jatropha curcas]
16 Hb_017170_030 0.2868628418 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
17 Hb_012022_170 0.2871451228 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
18 Hb_001975_030 0.2903131742 - - 4-diphosphocytidyl-2-c-methyl-d-erythritol kinase, partial [Plectranthus barbatus]
19 Hb_001510_020 0.2904444138 - - Diaminopimelate epimerase, putative [Ricinus communis]
20 Hb_000317_420 0.292163656 - - PREDICTED: extradiol ring-cleavage dioxygenase [Jatropha curcas]

Gene co-expression network

sample Hb_001789_140 Hb_001789_140 Hb_002768_090 Hb_002768_090 Hb_001789_140--Hb_002768_090 Hb_002774_110 Hb_002774_110 Hb_001789_140--Hb_002774_110 Hb_002284_190 Hb_002284_190 Hb_001789_140--Hb_002284_190 Hb_003680_140 Hb_003680_140 Hb_001789_140--Hb_003680_140 Hb_161010_010 Hb_161010_010 Hb_001789_140--Hb_161010_010 Hb_006836_030 Hb_006836_030 Hb_001789_140--Hb_006836_030 Hb_017491_020 Hb_017491_020 Hb_002768_090--Hb_017491_020 Hb_000077_180 Hb_000077_180 Hb_002768_090--Hb_000077_180 Hb_007441_240 Hb_007441_240 Hb_002768_090--Hb_007441_240 Hb_000377_120 Hb_000377_120 Hb_002768_090--Hb_000377_120 Hb_000739_140 Hb_000739_140 Hb_002768_090--Hb_000739_140 Hb_000210_060 Hb_000210_060 Hb_002768_090--Hb_000210_060 Hb_002783_110 Hb_002783_110 Hb_002774_110--Hb_002783_110 Hb_005144_110 Hb_005144_110 Hb_002774_110--Hb_005144_110 Hb_000059_010 Hb_000059_010 Hb_002774_110--Hb_000059_010 Hb_001604_150 Hb_001604_150 Hb_002774_110--Hb_001604_150 Hb_000614_170 Hb_000614_170 Hb_002774_110--Hb_000614_170 Hb_001102_210 Hb_001102_210 Hb_002774_110--Hb_001102_210 Hb_001776_190 Hb_001776_190 Hb_002284_190--Hb_001776_190 Hb_008759_020 Hb_008759_020 Hb_002284_190--Hb_008759_020 Hb_000671_160 Hb_000671_160 Hb_002284_190--Hb_000671_160 Hb_007153_040 Hb_007153_040 Hb_002284_190--Hb_007153_040 Hb_006538_190 Hb_006538_190 Hb_002284_190--Hb_006538_190 Hb_000694_060 Hb_000694_060 Hb_002284_190--Hb_000694_060 Hb_002309_050 Hb_002309_050 Hb_003680_140--Hb_002309_050 Hb_001975_030 Hb_001975_030 Hb_003680_140--Hb_001975_030 Hb_002603_110 Hb_002603_110 Hb_003680_140--Hb_002603_110 Hb_003680_140--Hb_006836_030 Hb_004931_110 Hb_004931_110 Hb_003680_140--Hb_004931_110 Hb_000317_420 Hb_000317_420 Hb_003680_140--Hb_000317_420 Hb_187677_010 Hb_187677_010 Hb_161010_010--Hb_187677_010 Hb_000008_060 Hb_000008_060 Hb_161010_010--Hb_000008_060 Hb_000700_080 Hb_000700_080 Hb_161010_010--Hb_000700_080 Hb_002527_050 Hb_002527_050 Hb_161010_010--Hb_002527_050 Hb_001616_110 Hb_001616_110 Hb_161010_010--Hb_001616_110 Hb_042202_060 Hb_042202_060 Hb_161010_010--Hb_042202_060 Hb_006836_030--Hb_000317_420 Hb_027298_030 Hb_027298_030 Hb_006836_030--Hb_027298_030 Hb_000012_110 Hb_000012_110 Hb_006836_030--Hb_000012_110 Hb_001975_040 Hb_001975_040 Hb_006836_030--Hb_001975_040 Hb_006836_030--Hb_001975_030 Hb_004007_110 Hb_004007_110 Hb_006836_030--Hb_004007_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.095772 0.178639 0.259099 0 0.0987751
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.601452 0.307436 0.531464 0.336323

CAGE analysis