Hb_002768_090

Information

Type -
Description -
Location Contig2768: 82722-84316
Sequence    

Annotation

kegg
ID pmum:103326446
description uncharacterized LOC103326446
nr
ID XP_012070839.1
description PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L3R3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00897 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28938: 82727-84118
cDNA
(Sanger)
(ID:Location)		 036_I20.ab1: 82931-84053

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002768_090 0.0 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
2 Hb_017491_020 0.1279023907 - - hypothetical protein B456_011G056700 [Gossypium raimondii]
3 Hb_000077_180 0.133662647 - - -
4 Hb_007441_240 0.1463305815 - - ethphon-induced protein [Hevea brasiliensis]
5 Hb_000377_120 0.1551668645 - - PREDICTED: acyl carrier protein 3, mitochondrial isoform X2 [Jatropha curcas]
6 Hb_000739_140 0.1612140161 - - PREDICTED: proteasome subunit beta type-1 [Jatropha curcas]
7 Hb_000210_060 0.162940105 transcription factor TF Family: E2F-DP hypothetical protein JCGZ_08780 [Jatropha curcas]
8 Hb_000163_050 0.1682211986 - - SPLICEOSOMAL protein U1A [Populus trichocarpa]
9 Hb_009075_010 0.1691295117 - - 60S ribosomal protein L10B [Hevea brasiliensis]
10 Hb_000317_420 0.1707335959 - - PREDICTED: extradiol ring-cleavage dioxygenase [Jatropha curcas]
11 Hb_001410_060 0.172447932 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
12 Hb_005054_260 0.1751836876 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A [Jatropha curcas]
13 Hb_000136_350 0.178818711 - - PREDICTED: 40S ribosomal protein S5 [Nomascus leucogenys]
14 Hb_000116_040 0.1794808567 - - PREDICTED: phosphoserine aminotransferase 1, chloroplastic-like [Jatropha curcas]
15 Hb_002900_130 0.1830169799 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
16 Hb_005306_070 0.1834686022 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
17 Hb_006836_030 0.1847642485 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
18 Hb_000723_170 0.1862929676 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
19 Hb_003305_020 0.1887940807 - - PREDICTED: AT-hook motif nuclear-localized protein 13-like [Jatropha curcas]
20 Hb_186982_040 0.1893158669 - - hypothetical protein PHAVU_003G089200g [Phaseolus vulgaris]

Gene co-expression network

sample Hb_002768_090 Hb_002768_090 Hb_017491_020 Hb_017491_020 Hb_002768_090--Hb_017491_020 Hb_000077_180 Hb_000077_180 Hb_002768_090--Hb_000077_180 Hb_007441_240 Hb_007441_240 Hb_002768_090--Hb_007441_240 Hb_000377_120 Hb_000377_120 Hb_002768_090--Hb_000377_120 Hb_000739_140 Hb_000739_140 Hb_002768_090--Hb_000739_140 Hb_000210_060 Hb_000210_060 Hb_002768_090--Hb_000210_060 Hb_017491_020--Hb_000077_180 Hb_000136_350 Hb_000136_350 Hb_017491_020--Hb_000136_350 Hb_186982_040 Hb_186982_040 Hb_017491_020--Hb_186982_040 Hb_017491_020--Hb_000377_120 Hb_000163_050 Hb_000163_050 Hb_017491_020--Hb_000163_050 Hb_017491_020--Hb_000210_060 Hb_000077_180--Hb_000377_120 Hb_001410_060 Hb_001410_060 Hb_000077_180--Hb_001410_060 Hb_005460_060 Hb_005460_060 Hb_000077_180--Hb_005460_060 Hb_000110_120 Hb_000110_120 Hb_000077_180--Hb_000110_120 Hb_000009_290 Hb_000009_290 Hb_000077_180--Hb_000009_290 Hb_007441_240--Hb_000110_120 Hb_007441_240--Hb_000077_180 Hb_007441_240--Hb_000739_140 Hb_000317_420 Hb_000317_420 Hb_007441_240--Hb_000317_420 Hb_028049_010 Hb_028049_010 Hb_007441_240--Hb_028049_010 Hb_000771_060 Hb_000771_060 Hb_007441_240--Hb_000771_060 Hb_000377_120--Hb_001410_060 Hb_000377_120--Hb_000136_350 Hb_000116_040 Hb_000116_040 Hb_000377_120--Hb_000116_040 Hb_000922_040 Hb_000922_040 Hb_000377_120--Hb_000922_040 Hb_000377_120--Hb_186982_040 Hb_009075_010 Hb_009075_010 Hb_000739_140--Hb_009075_010 Hb_005054_260 Hb_005054_260 Hb_000739_140--Hb_005054_260 Hb_005306_070 Hb_005306_070 Hb_000739_140--Hb_005306_070 Hb_000768_130 Hb_000768_130 Hb_000739_140--Hb_000768_130 Hb_001053_140 Hb_001053_140 Hb_000739_140--Hb_001053_140 Hb_000739_140--Hb_001410_060 Hb_015057_020 Hb_015057_020 Hb_000210_060--Hb_015057_020 Hb_168893_020 Hb_168893_020 Hb_000210_060--Hb_168893_020 Hb_002477_290 Hb_002477_290 Hb_000210_060--Hb_002477_290 Hb_001898_050 Hb_001898_050 Hb_000210_060--Hb_001898_050 Hb_001510_020 Hb_001510_020 Hb_000210_060--Hb_001510_020 Hb_005276_040 Hb_005276_040 Hb_000210_060--Hb_005276_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.03788 4.03811 8.4511 13.8974 0.724761 4.34915
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.38796 27.6904 6.56825 16.4158 6.87965

CAGE analysis