Hb_001619_090

Information

Type -
Description -
Location Contig1619: 116603-119895
Sequence    

Annotation

kegg
ID rcu:RCOM_1034910
description heat shock protein binding protein, putative
nr
ID XP_002513903.1
description heat shock protein binding protein, putative [Ricinus communis]
swissprot
ID Q9MAH1
description TPR repeat-containing thioredoxin TTL1 OS=Arabidopsis thaliana GN=TTL1 PE=1 SV=1
trembl
ID B9RJI4
description Heat shock protein binding protein, putative OS=Ricinus communis GN=RCOM_1034910 PE=4 SV=1
Gene Ontology
ID GO:0005623
description tpr repeat-containing thioredoxin ttl1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14542: 118133-118756 , PASA_asmbl_14543: 118772-120142
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001619_090 0.0 - - heat shock protein binding protein, putative [Ricinus communis]
2 Hb_089305_010 0.1566897155 - - PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]
3 Hb_000181_330 0.1608305849 - - ubiquitin ligase protein cop1, putative [Ricinus communis]
4 Hb_074109_010 0.1617337099 - - PREDICTED: putative auxin efflux carrier component 5 [Jatropha curcas]
5 Hb_000120_090 0.1644307979 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]
6 Hb_002999_130 0.1654037826 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0008s08740g [Populus trichocarpa]
7 Hb_000808_260 0.1672083232 - - hypothetical protein RCOM_1434920 [Ricinus communis]
8 Hb_000260_410 0.1678265222 - - PREDICTED: protein LURP-one-related 8 [Jatropha curcas]
9 Hb_000594_150 0.1679319689 - - PREDICTED: serine/threonine-protein kinase STN7, chloroplastic-like isoform X1 [Nelumbo nucifera]
10 Hb_001771_060 0.1740894814 - - hypothetical protein B456_012G144100 [Gossypium raimondii]
11 Hb_000107_090 0.1746859093 - - PREDICTED: kinesin KP1 [Jatropha curcas]
12 Hb_000923_100 0.1775402741 - - chloride channel clc, putative [Ricinus communis]
13 Hb_002835_280 0.1775802126 - - PREDICTED: L-type lectin-domain containing receptor kinase S.1 [Jatropha curcas]
14 Hb_021409_110 0.1779997162 - - WD-repeat protein, putative [Ricinus communis]
15 Hb_019837_010 0.178025395 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004678_010 0.1785170616 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]
17 Hb_003071_050 0.1820677515 transcription factor TF Family: ERF ethylene-responsive element binding protein 2 [Hevea brasiliensis]
18 Hb_000567_330 0.1823799306 - - PREDICTED: probable metal-nicotianamine transporter YSL7 [Jatropha curcas]
19 Hb_073171_050 0.1825402376 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]
20 Hb_000336_180 0.1831934207 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001619_090 Hb_001619_090 Hb_089305_010 Hb_089305_010 Hb_001619_090--Hb_089305_010 Hb_000181_330 Hb_000181_330 Hb_001619_090--Hb_000181_330 Hb_074109_010 Hb_074109_010 Hb_001619_090--Hb_074109_010 Hb_000120_090 Hb_000120_090 Hb_001619_090--Hb_000120_090 Hb_002999_130 Hb_002999_130 Hb_001619_090--Hb_002999_130 Hb_000808_260 Hb_000808_260 Hb_001619_090--Hb_000808_260 Hb_089305_010--Hb_000120_090 Hb_001621_050 Hb_001621_050 Hb_089305_010--Hb_001621_050 Hb_000567_330 Hb_000567_330 Hb_089305_010--Hb_000567_330 Hb_010812_060 Hb_010812_060 Hb_089305_010--Hb_010812_060 Hb_000110_260 Hb_000110_260 Hb_089305_010--Hb_000110_260 Hb_021409_110 Hb_021409_110 Hb_089305_010--Hb_021409_110 Hb_000243_060 Hb_000243_060 Hb_000181_330--Hb_000243_060 Hb_000322_030 Hb_000322_030 Hb_000181_330--Hb_000322_030 Hb_002311_280 Hb_002311_280 Hb_000181_330--Hb_002311_280 Hb_000272_030 Hb_000272_030 Hb_000181_330--Hb_000272_030 Hb_004531_170 Hb_004531_170 Hb_000181_330--Hb_004531_170 Hb_000173_270 Hb_000173_270 Hb_000181_330--Hb_000173_270 Hb_000005_100 Hb_000005_100 Hb_074109_010--Hb_000005_100 Hb_003688_140 Hb_003688_140 Hb_074109_010--Hb_003688_140 Hb_003055_070 Hb_003055_070 Hb_074109_010--Hb_003055_070 Hb_004648_030 Hb_004648_030 Hb_074109_010--Hb_004648_030 Hb_000834_060 Hb_000834_060 Hb_074109_010--Hb_000834_060 Hb_004223_270 Hb_004223_270 Hb_074109_010--Hb_004223_270 Hb_000120_090--Hb_000110_260 Hb_000120_090--Hb_001621_050 Hb_001102_200 Hb_001102_200 Hb_000120_090--Hb_001102_200 Hb_000120_090--Hb_000272_030 Hb_001213_030 Hb_001213_030 Hb_000120_090--Hb_001213_030 Hb_073171_050 Hb_073171_050 Hb_002999_130--Hb_073171_050 Hb_000594_150 Hb_000594_150 Hb_002999_130--Hb_000594_150 Hb_000656_260 Hb_000656_260 Hb_002999_130--Hb_000656_260 Hb_010180_050 Hb_010180_050 Hb_002999_130--Hb_010180_050 Hb_004800_140 Hb_004800_140 Hb_002999_130--Hb_004800_140 Hb_001369_020 Hb_001369_020 Hb_002999_130--Hb_001369_020 Hb_004976_080 Hb_004976_080 Hb_000808_260--Hb_004976_080 Hb_019837_010 Hb_019837_010 Hb_000808_260--Hb_019837_010 Hb_000808_260--Hb_000594_150 Hb_004907_070 Hb_004907_070 Hb_000808_260--Hb_004907_070 Hb_000072_240 Hb_000072_240 Hb_000808_260--Hb_000072_240 Hb_003126_010 Hb_003126_010 Hb_000808_260--Hb_003126_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0318925 0.579597 0.613998 0.438736 0.0349233 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0416485 0.114699 0 0.0651457 0.624597

CAGE analysis