Hb_001246_070

Information

Type -
Description -
Location Contig1246: 46208-48405
Sequence    

Annotation

kegg
ID pxb:103935521
description protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic-like
nr
ID XP_012083757.1
description PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Jatropha curcas]
swissprot
ID Q9M903
description Protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic OS=Arabidopsis thaliana GN=TGD4 PE=1 SV=1
trembl
ID A0A067JY57
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14677 PE=4 SV=1
Gene Ontology
ID GO:0009536
description protein trigalactosyldiacylglycerol chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001246_070 0.0 - - PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Jatropha curcas]
2 Hb_001343_010 0.2450601114 - - -
3 Hb_010815_020 0.283906588 - - unnamed protein product [Vitis vinifera]
4 Hb_009710_030 0.2851599613 - - -
5 Hb_004785_080 0.2875866796 - - hypothetical protein POPTR_0005s21250g [Populus trichocarpa]
6 Hb_030131_010 0.2920730691 - - PREDICTED: probable acyl-activating enzyme 1, peroxisomal, partial [Jatropha curcas]
7 Hb_052764_110 0.2976440925 - - PREDICTED: quinone oxidoreductase PIG3 isoform X1 [Jatropha curcas]
8 Hb_000661_080 0.2988701964 - - monoxygenase, putative [Ricinus communis]
9 Hb_000752_050 0.3008298754 - - PREDICTED: uncharacterized protein LOC102610887 [Citrus sinensis]
10 Hb_000286_200 0.3030958719 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
11 Hb_000041_010 0.3038812542 - - pfkB-type carbohydrate kinase family protein [Populus trichocarpa]
12 Hb_000599_200 0.305012409 - - ABC transporter family protein [Populus trichocarpa]
13 Hb_001452_210 0.3055904664 - - molybdopterin biosynthesis CNX1 protein [Arabidopsis thaliana]
14 Hb_009711_050 0.3100884608 - - hypothetical protein POPTR_0019s04500g [Populus trichocarpa]
15 Hb_008749_040 0.3128381003 - - PREDICTED: formin-like protein 20 [Populus euphratica]
16 Hb_179924_010 0.3128751822 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like [Populus euphratica]
17 Hb_140012_010 0.3163098127 - - PREDICTED: putative disease resistance protein RGA3 [Eucalyptus grandis]
18 Hb_183086_050 0.3177184875 - - PREDICTED: metal-nicotianamine transporter YSL3 [Jatropha curcas]
19 Hb_033661_010 0.3188005585 - - PREDICTED: uncharacterized protein LOC105852393, partial [Cicer arietinum]
20 Hb_004897_010 0.3192326891 - - -

Gene co-expression network

sample Hb_001246_070 Hb_001246_070 Hb_001343_010 Hb_001343_010 Hb_001246_070--Hb_001343_010 Hb_010815_020 Hb_010815_020 Hb_001246_070--Hb_010815_020 Hb_009710_030 Hb_009710_030 Hb_001246_070--Hb_009710_030 Hb_004785_080 Hb_004785_080 Hb_001246_070--Hb_004785_080 Hb_030131_010 Hb_030131_010 Hb_001246_070--Hb_030131_010 Hb_052764_110 Hb_052764_110 Hb_001246_070--Hb_052764_110 Hb_002759_090 Hb_002759_090 Hb_001343_010--Hb_002759_090 Hb_000752_050 Hb_000752_050 Hb_001343_010--Hb_000752_050 Hb_001343_010--Hb_010815_020 Hb_003435_010 Hb_003435_010 Hb_001343_010--Hb_003435_010 Hb_000330_030 Hb_000330_030 Hb_001343_010--Hb_000330_030 Hb_004897_010 Hb_004897_010 Hb_010815_020--Hb_004897_010 Hb_000286_200 Hb_000286_200 Hb_010815_020--Hb_000286_200 Hb_004870_040 Hb_004870_040 Hb_010815_020--Hb_004870_040 Hb_003098_080 Hb_003098_080 Hb_010815_020--Hb_003098_080 Hb_000172_190 Hb_000172_190 Hb_010815_020--Hb_000172_190 Hb_012022_050 Hb_012022_050 Hb_010815_020--Hb_012022_050 Hb_009615_180 Hb_009615_180 Hb_009710_030--Hb_009615_180 Hb_011364_020 Hb_011364_020 Hb_009710_030--Hb_011364_020 Hb_003226_190 Hb_003226_190 Hb_009710_030--Hb_003226_190 Hb_002783_150 Hb_002783_150 Hb_009710_030--Hb_002783_150 Hb_030959_010 Hb_030959_010 Hb_009710_030--Hb_030959_010 Hb_001546_010 Hb_001546_010 Hb_009710_030--Hb_001546_010 Hb_000204_070 Hb_000204_070 Hb_004785_080--Hb_000204_070 Hb_000197_220 Hb_000197_220 Hb_004785_080--Hb_000197_220 Hb_158560_010 Hb_158560_010 Hb_004785_080--Hb_158560_010 Hb_004785_080--Hb_052764_110 Hb_001999_210 Hb_001999_210 Hb_004785_080--Hb_001999_210 Hb_000789_200 Hb_000789_200 Hb_004785_080--Hb_000789_200 Hb_006452_230 Hb_006452_230 Hb_030131_010--Hb_006452_230 Hb_000331_520 Hb_000331_520 Hb_030131_010--Hb_000331_520 Hb_000175_260 Hb_000175_260 Hb_030131_010--Hb_000175_260 Hb_030131_010--Hb_009710_030 Hb_000254_140 Hb_000254_140 Hb_030131_010--Hb_000254_140 Hb_000258_140 Hb_000258_140 Hb_030131_010--Hb_000258_140 Hb_001452_210 Hb_001452_210 Hb_052764_110--Hb_001452_210 Hb_007023_030 Hb_007023_030 Hb_052764_110--Hb_007023_030 Hb_002338_050 Hb_002338_050 Hb_052764_110--Hb_002338_050 Hb_000053_060 Hb_000053_060 Hb_052764_110--Hb_000053_060 Hb_098315_080 Hb_098315_080 Hb_052764_110--Hb_098315_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0564586 0.0188182 0 0.0586008 0 0.0198855
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0517065 0.0406664 0 0.0818015 0.083096

CAGE analysis