Hb_001343_010

Information

Type -
Description -
Location Contig1343: 2248-9847
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09732: 4497-4938
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001343_010 0.0 - - -
2 Hb_001246_070 0.2450601114 - - PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Jatropha curcas]
3 Hb_002759_090 0.304976496 - - -
4 Hb_000752_050 0.323369482 - - PREDICTED: uncharacterized protein LOC102610887 [Citrus sinensis]
5 Hb_010815_020 0.3298174309 - - unnamed protein product [Vitis vinifera]
6 Hb_003435_010 0.3354459923 - - PREDICTED: ras-related protein RABC2a-like [Jatropha curcas]
7 Hb_000330_030 0.3369253315 - - PREDICTED: uncharacterized protein LOC105633814 [Jatropha curcas]
8 Hb_006452_230 0.3381162293 - - PREDICTED: uncharacterized protein LOC105635044 [Jatropha curcas]
9 Hb_000811_080 0.3431514988 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005054_240 0.3458804708 - - conserved hypothetical protein [Ricinus communis]
11 Hb_009711_050 0.3537805399 - - hypothetical protein POPTR_0019s04500g [Populus trichocarpa]
12 Hb_011947_020 0.3541883426 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
13 Hb_030131_010 0.3546798206 - - PREDICTED: probable acyl-activating enzyme 1, peroxisomal, partial [Jatropha curcas]
14 Hb_004897_010 0.356884178 - - -
15 Hb_001546_010 0.3586201388 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000189_220 0.3591519263 - - -
17 Hb_172665_010 0.3596712018 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
18 Hb_000189_590 0.3597546009 - - PREDICTED: cysteine synthase [Jatropha curcas]
19 Hb_000599_200 0.3662016917 - - ABC transporter family protein [Populus trichocarpa]
20 Hb_020805_140 0.368364446 - - PREDICTED: F-box/kelch-repeat protein At5g42360-like [Jatropha curcas]

Gene co-expression network

sample Hb_001343_010 Hb_001343_010 Hb_001246_070 Hb_001246_070 Hb_001343_010--Hb_001246_070 Hb_002759_090 Hb_002759_090 Hb_001343_010--Hb_002759_090 Hb_000752_050 Hb_000752_050 Hb_001343_010--Hb_000752_050 Hb_010815_020 Hb_010815_020 Hb_001343_010--Hb_010815_020 Hb_003435_010 Hb_003435_010 Hb_001343_010--Hb_003435_010 Hb_000330_030 Hb_000330_030 Hb_001343_010--Hb_000330_030 Hb_001246_070--Hb_010815_020 Hb_009710_030 Hb_009710_030 Hb_001246_070--Hb_009710_030 Hb_004785_080 Hb_004785_080 Hb_001246_070--Hb_004785_080 Hb_030131_010 Hb_030131_010 Hb_001246_070--Hb_030131_010 Hb_052764_110 Hb_052764_110 Hb_001246_070--Hb_052764_110 Hb_006816_270 Hb_006816_270 Hb_002759_090--Hb_006816_270 Hb_005565_060 Hb_005565_060 Hb_002759_090--Hb_005565_060 Hb_002759_090--Hb_000330_030 Hb_002506_090 Hb_002506_090 Hb_002759_090--Hb_002506_090 Hb_015941_050 Hb_015941_050 Hb_002759_090--Hb_015941_050 Hb_005725_260 Hb_005725_260 Hb_000752_050--Hb_005725_260 Hb_006869_010 Hb_006869_010 Hb_000752_050--Hb_006869_010 Hb_000752_050--Hb_030131_010 Hb_000752_050--Hb_003435_010 Hb_000796_170 Hb_000796_170 Hb_000752_050--Hb_000796_170 Hb_004586_200 Hb_004586_200 Hb_000752_050--Hb_004586_200 Hb_004897_010 Hb_004897_010 Hb_010815_020--Hb_004897_010 Hb_000286_200 Hb_000286_200 Hb_010815_020--Hb_000286_200 Hb_004870_040 Hb_004870_040 Hb_010815_020--Hb_004870_040 Hb_003098_080 Hb_003098_080 Hb_010815_020--Hb_003098_080 Hb_000172_190 Hb_000172_190 Hb_010815_020--Hb_000172_190 Hb_012022_050 Hb_012022_050 Hb_010815_020--Hb_012022_050 Hb_000009_660 Hb_000009_660 Hb_003435_010--Hb_000009_660 Hb_000116_360 Hb_000116_360 Hb_003435_010--Hb_000116_360 Hb_000120_290 Hb_000120_290 Hb_003435_010--Hb_000120_290 Hb_002447_080 Hb_002447_080 Hb_003435_010--Hb_002447_080 Hb_183086_050 Hb_183086_050 Hb_003435_010--Hb_183086_050 Hb_001976_040 Hb_001976_040 Hb_003435_010--Hb_001976_040 Hb_003673_040 Hb_003673_040 Hb_000330_030--Hb_003673_040 Hb_001496_130 Hb_001496_130 Hb_000330_030--Hb_001496_130 Hb_012506_070 Hb_012506_070 Hb_000330_030--Hb_012506_070 Hb_000856_060 Hb_000856_060 Hb_000330_030--Hb_000856_060 Hb_000690_150 Hb_000690_150 Hb_000330_030--Hb_000690_150 Hb_050959_010 Hb_050959_010 Hb_000330_030--Hb_050959_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0865608 0 0 0.183958 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0884677 0.0695402 0 0.141889 0.136403

CAGE analysis