Hb_002506_090

Information

Type -
Description -
Location Contig2506: 141245-145744
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26214: 144569-144669
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002506_090 0.0 - - -
2 Hb_000815_060 0.2212415403 - - PREDICTED: uncharacterized protein LOC105630460 [Jatropha curcas]
3 Hb_150930_010 0.222960056 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002506_060 0.229480405 - - PREDICTED: probable transporter mch1 [Populus euphratica]
5 Hb_002447_080 0.230825004 - - Angio-associated migratory cell protein, putative [Ricinus communis]
6 Hb_000696_160 0.2393831016 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
7 Hb_000003_720 0.2405643115 - - hypothetical protein POPTR_0003s04720g [Populus trichocarpa]
8 Hb_032808_020 0.240899483 - - PREDICTED: hypersensitive-induced response protein 2 [Nicotiana tomentosiformis]
9 Hb_022425_040 0.2437721299 - - PREDICTED: probable RNA methyltransferase At5g51130 [Jatropha curcas]
10 Hb_000264_210 0.2438994312 - - tfiih, polypeptide, putative [Ricinus communis]
11 Hb_002685_040 0.2444808833 - - hypothetical protein CICLE_v10017252mg [Citrus clementina]
12 Hb_032208_070 0.2456387191 - - PREDICTED: probable polyamine transporter At3g13620 isoform X2 [Jatropha curcas]
13 Hb_008062_070 0.24762363 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Jatropha curcas]
14 Hb_000217_030 0.248539897 - - Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1 [Theobroma cacao]
15 Hb_004724_380 0.2511140984 - - PREDICTED: cold-inducible RNA-binding protein B-like [Jatropha curcas]
16 Hb_000622_180 0.2548366629 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
17 Hb_002518_080 0.2553826933 - - PREDICTED: uncharacterized protein LOC105639837 [Jatropha curcas]
18 Hb_171900_060 0.2557164022 - - PREDICTED: uncharacterized protein LOC105643368 [Jatropha curcas]
19 Hb_001832_060 0.2571360051 - - PREDICTED: translation machinery-associated protein 22 [Jatropha curcas]
20 Hb_000096_170 0.2571376885 - - PREDICTED: 50S ribosomal protein L12, cyanelle-like [Jatropha curcas]

Gene co-expression network

sample Hb_002506_090 Hb_002506_090 Hb_000815_060 Hb_000815_060 Hb_002506_090--Hb_000815_060 Hb_150930_010 Hb_150930_010 Hb_002506_090--Hb_150930_010 Hb_002506_060 Hb_002506_060 Hb_002506_090--Hb_002506_060 Hb_002447_080 Hb_002447_080 Hb_002506_090--Hb_002447_080 Hb_000696_160 Hb_000696_160 Hb_002506_090--Hb_000696_160 Hb_000003_720 Hb_000003_720 Hb_002506_090--Hb_000003_720 Hb_022425_040 Hb_022425_040 Hb_000815_060--Hb_022425_040 Hb_000217_030 Hb_000217_030 Hb_000815_060--Hb_000217_030 Hb_000417_360 Hb_000417_360 Hb_000815_060--Hb_000417_360 Hb_002518_080 Hb_002518_080 Hb_000815_060--Hb_002518_080 Hb_001047_230 Hb_001047_230 Hb_000815_060--Hb_001047_230 Hb_011671_100 Hb_011671_100 Hb_000815_060--Hb_011671_100 Hb_000612_040 Hb_000612_040 Hb_150930_010--Hb_000612_040 Hb_002609_160 Hb_002609_160 Hb_150930_010--Hb_002609_160 Hb_000317_070 Hb_000317_070 Hb_150930_010--Hb_000317_070 Hb_000356_090 Hb_000356_090 Hb_150930_010--Hb_000356_090 Hb_010560_030 Hb_010560_030 Hb_150930_010--Hb_010560_030 Hb_000087_130 Hb_000087_130 Hb_150930_010--Hb_000087_130 Hb_015807_140 Hb_015807_140 Hb_002506_060--Hb_015807_140 Hb_000450_130 Hb_000450_130 Hb_002506_060--Hb_000450_130 Hb_000816_230 Hb_000816_230 Hb_002506_060--Hb_000816_230 Hb_000230_150 Hb_000230_150 Hb_002506_060--Hb_000230_150 Hb_001882_070 Hb_001882_070 Hb_002506_060--Hb_001882_070 Hb_000836_010 Hb_000836_010 Hb_002506_060--Hb_000836_010 Hb_003020_280 Hb_003020_280 Hb_002447_080--Hb_003020_280 Hb_005488_020 Hb_005488_020 Hb_002447_080--Hb_005488_020 Hb_000071_170 Hb_000071_170 Hb_002447_080--Hb_000071_170 Hb_003994_120 Hb_003994_120 Hb_002447_080--Hb_003994_120 Hb_005054_230 Hb_005054_230 Hb_002447_080--Hb_005054_230 Hb_004450_040 Hb_004450_040 Hb_002447_080--Hb_004450_040 Hb_000522_150 Hb_000522_150 Hb_000696_160--Hb_000522_150 Hb_002553_040 Hb_002553_040 Hb_000696_160--Hb_002553_040 Hb_007423_040 Hb_007423_040 Hb_000696_160--Hb_007423_040 Hb_008225_090 Hb_008225_090 Hb_000696_160--Hb_008225_090 Hb_000010_110 Hb_000010_110 Hb_000696_160--Hb_000010_110 Hb_011909_120 Hb_011909_120 Hb_000696_160--Hb_011909_120 Hb_020581_010 Hb_020581_010 Hb_000003_720--Hb_020581_010 Hb_101733_030 Hb_101733_030 Hb_000003_720--Hb_101733_030 Hb_006637_070 Hb_006637_070 Hb_000003_720--Hb_006637_070 Hb_014109_040 Hb_014109_040 Hb_000003_720--Hb_014109_040 Hb_038172_010 Hb_038172_010 Hb_000003_720--Hb_038172_010 Hb_005784_040 Hb_005784_040 Hb_000003_720--Hb_005784_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.323323 0.0835693 0.0472967 0.152855 0.0979337 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.140218 0.353018 0.083189 0.105555 0.0926603

CAGE analysis