Hb_000836_010

Information

Type -
Description -
Location Contig836: 20654-23775
Sequence    

Annotation

kegg
ID tcc:TCM_005308
description Cysteine synthase C1
nr
ID AAP41852.1
description beta-cyanoalanine synthase [Hevea brasiliensis]
swissprot
ID Q1KLZ2
description L-3-cyanoalanine synthase 1, mitochondrial OS=Malus domestica GN=CAS1 PE=1 SV=1
trembl
ID Q5VLJ3
description Cysteine synthase OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0009507
description beta-cyanoalanine synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59898: 20557-23881 , PASA_asmbl_59899: 22999-23881 , PASA_asmbl_59900: 21947-22294
cDNA
(Sanger)
(ID:Location)		 007_I20.ab1: 20653-22152 , 012_I17.ab1: 20656-21810 , 022_A19.ab1: 20729-22276 , 030_E23.ab1: 20729-21936

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000836_010 0.0 - - beta-cyanoalanine synthase [Hevea brasiliensis]
2 Hb_005045_070 0.1067555954 - - PREDICTED: deSI-like protein At4g17486 [Jatropha curcas]
3 Hb_002324_010 0.1390750346 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
4 Hb_001158_150 0.1416560754 - - hypothetical protein JCGZ_26407 [Jatropha curcas]
5 Hb_006452_040 0.1438786353 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
6 Hb_001225_010 0.1452830575 - - unnamed protein product [Coffea canephora]
7 Hb_003376_190 0.14698283 - - syntaxin, putative [Ricinus communis]
8 Hb_000363_320 0.1502121384 - - PREDICTED: V-type proton ATPase subunit e1 [Jatropha curcas]
9 Hb_000000_470 0.1513932174 - - PREDICTED: lysophospholipid acyltransferase LPEAT1 isoform X4 [Jatropha curcas]
10 Hb_001172_100 0.1517478108 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
11 Hb_003018_050 0.152550066 - - PREDICTED: peptidyl-prolyl cis-trans isomerase Pin1 [Jatropha curcas]
12 Hb_000107_300 0.1532142564 - - PREDICTED: AP-1 complex subunit sigma-2 [Jatropha curcas]
13 Hb_000130_100 0.1559117498 - - hypothetical protein CICLE_v10022662mg [Citrus clementina]
14 Hb_001953_090 0.1568412793 - - PREDICTED: membrane-anchored ubiquitin-fold protein 3 [Jatropha curcas]
15 Hb_077399_010 0.1583732445 - - hypothetical protein POPTR_0003s09910g [Populus trichocarpa]
16 Hb_000203_020 0.1585223345 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
17 Hb_014834_030 0.1607825681 - - -
18 Hb_000045_250 0.1640122877 - - PREDICTED: uncharacterized protein LOC105646572 isoform X1 [Jatropha curcas]
19 Hb_000638_170 0.1661657918 - - PREDICTED: ras-related protein RABC1 [Jatropha curcas]
20 Hb_012251_010 0.1671686754 - - -

Gene co-expression network

sample Hb_000836_010 Hb_000836_010 Hb_005045_070 Hb_005045_070 Hb_000836_010--Hb_005045_070 Hb_002324_010 Hb_002324_010 Hb_000836_010--Hb_002324_010 Hb_001158_150 Hb_001158_150 Hb_000836_010--Hb_001158_150 Hb_006452_040 Hb_006452_040 Hb_000836_010--Hb_006452_040 Hb_001225_010 Hb_001225_010 Hb_000836_010--Hb_001225_010 Hb_003376_190 Hb_003376_190 Hb_000836_010--Hb_003376_190 Hb_005045_070--Hb_002324_010 Hb_001172_100 Hb_001172_100 Hb_005045_070--Hb_001172_100 Hb_072922_020 Hb_072922_020 Hb_005045_070--Hb_072922_020 Hb_005045_070--Hb_006452_040 Hb_000087_130 Hb_000087_130 Hb_005045_070--Hb_000087_130 Hb_005045_070--Hb_003376_190 Hb_002324_010--Hb_003376_190 Hb_000384_120 Hb_000384_120 Hb_002324_010--Hb_000384_120 Hb_002324_010--Hb_001172_100 Hb_002324_010--Hb_072922_020 Hb_138585_040 Hb_138585_040 Hb_002324_010--Hb_138585_040 Hb_003018_050 Hb_003018_050 Hb_001158_150--Hb_003018_050 Hb_005278_020 Hb_005278_020 Hb_001158_150--Hb_005278_020 Hb_001842_040 Hb_001842_040 Hb_001158_150--Hb_001842_040 Hb_002631_020 Hb_002631_020 Hb_001158_150--Hb_002631_020 Hb_000364_020 Hb_000364_020 Hb_001158_150--Hb_000364_020 Hb_001158_150--Hb_006452_040 Hb_006452_040--Hb_003018_050 Hb_006452_040--Hb_002631_020 Hb_001155_040 Hb_001155_040 Hb_006452_040--Hb_001155_040 Hb_007317_160 Hb_007317_160 Hb_006452_040--Hb_007317_160 Hb_001221_310 Hb_001221_310 Hb_006452_040--Hb_001221_310 Hb_005463_140 Hb_005463_140 Hb_006452_040--Hb_005463_140 Hb_001225_010--Hb_001172_100 Hb_003020_330 Hb_003020_330 Hb_001225_010--Hb_003020_330 Hb_000110_170 Hb_000110_170 Hb_001225_010--Hb_000110_170 Hb_000203_020 Hb_000203_020 Hb_001225_010--Hb_000203_020 Hb_001449_090 Hb_001449_090 Hb_001225_010--Hb_001449_090 Hb_000878_020 Hb_000878_020 Hb_001225_010--Hb_000878_020 Hb_000107_300 Hb_000107_300 Hb_003376_190--Hb_000107_300 Hb_000215_330 Hb_000215_330 Hb_003376_190--Hb_000215_330 Hb_005235_030 Hb_005235_030 Hb_003376_190--Hb_005235_030 Hb_005269_080 Hb_005269_080 Hb_003376_190--Hb_005269_080 Hb_006915_040 Hb_006915_040 Hb_003376_190--Hb_006915_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
99.3403 20.0801 18.8512 264.317 67.6949 72.8802
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
153.382 475.763 194.637 52.8975 58.4282

CAGE analysis