Hb_002506_060

Information

Type -
Description -
Location Contig2506: 115992-120393
Sequence    

Annotation

kegg
ID pop:POPTR_0004s17910g
description POPTRDRAFT_818181; nodulin family protein
nr
ID XP_011001982.1
description PREDICTED: probable transporter mch1 [Populus euphratica]
swissprot
ID F4I9E1
description Protein NUCLEAR FUSION DEFECTIVE 4 OS=Arabidopsis thaliana GN=NFD4 PE=3 SV=1
trembl
ID B9H180
description Nodulin family protein OS=Populus trichocarpa GN=POPTR_0004s17910g PE=4 SV=1
Gene Ontology
ID GO:0009507
description nodulin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26212: 116043-120330 , PASA_asmbl_26213: 116043-117871
cDNA
(Sanger)
(ID:Location)		 042_E21.ab1: 116043-116869

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002506_060 0.0 - - PREDICTED: probable transporter mch1 [Populus euphratica]
2 Hb_015807_140 0.1228964668 - - small heat-shock protein, putative [Ricinus communis]
3 Hb_000450_130 0.1610432389 - - PREDICTED: uncharacterized protein LOC105630216 [Jatropha curcas]
4 Hb_000816_230 0.1647533967 - - PREDICTED: adenine/guanine permease AZG1 [Jatropha curcas]
5 Hb_000230_150 0.1659607396 - - sugar transporter, putative [Ricinus communis]
6 Hb_001882_070 0.1715884246 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634911 [Jatropha curcas]
7 Hb_000836_010 0.1717729382 - - beta-cyanoalanine synthase [Hevea brasiliensis]
8 Hb_000963_030 0.1725051586 - - PREDICTED: uncharacterized protein LOC105628095 [Jatropha curcas]
9 Hb_009787_040 0.1741514828 desease resistance Gene Name: AAA_17 PREDICTED: uncharacterized protein LOC105135462 isoform X2 [Populus euphratica]
10 Hb_000915_120 0.1745782674 - - Peptidylprolyl cis/trans isomerase [Theobroma cacao]
11 Hb_007304_070 0.1774033224 - - hypoxanthine-guanine phosphoribosyltransferase, putative [Ricinus communis]
12 Hb_003326_020 0.1775796665 - - PREDICTED: replication protein A 32 kDa subunit B [Jatropha curcas]
13 Hb_150930_010 0.1779509366 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003125_150 0.1788353785 - - PREDICTED: protein transport protein Sec61 subunit gamma [Jatropha curcas]
15 Hb_005045_070 0.1815746051 - - PREDICTED: deSI-like protein At4g17486 [Jatropha curcas]
16 Hb_002053_060 0.1817370481 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 1 [Jatropha curcas]
17 Hb_001269_270 0.1827667002 - - 60S ribosomal protein L27B [Hevea brasiliensis]
18 Hb_000282_070 0.1835550825 - - PREDICTED: protein REVERSION-TO-ETHYLENE SENSITIVITY1 [Jatropha curcas]
19 Hb_006452_040 0.1839610526 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
20 Hb_001155_040 0.1839847135 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]

Gene co-expression network

sample Hb_002506_060 Hb_002506_060 Hb_015807_140 Hb_015807_140 Hb_002506_060--Hb_015807_140 Hb_000450_130 Hb_000450_130 Hb_002506_060--Hb_000450_130 Hb_000816_230 Hb_000816_230 Hb_002506_060--Hb_000816_230 Hb_000230_150 Hb_000230_150 Hb_002506_060--Hb_000230_150 Hb_001882_070 Hb_001882_070 Hb_002506_060--Hb_001882_070 Hb_000836_010 Hb_000836_010 Hb_002506_060--Hb_000836_010 Hb_009787_040 Hb_009787_040 Hb_015807_140--Hb_009787_040 Hb_002053_060 Hb_002053_060 Hb_015807_140--Hb_002053_060 Hb_000099_060 Hb_000099_060 Hb_015807_140--Hb_000099_060 Hb_122239_010 Hb_122239_010 Hb_015807_140--Hb_122239_010 Hb_138585_060 Hb_138585_060 Hb_015807_140--Hb_138585_060 Hb_015807_100 Hb_015807_100 Hb_000450_130--Hb_015807_100 Hb_000363_480 Hb_000363_480 Hb_000450_130--Hb_000363_480 Hb_008921_020 Hb_008921_020 Hb_000450_130--Hb_008921_020 Hb_000417_360 Hb_000417_360 Hb_000450_130--Hb_000417_360 Hb_006478_160 Hb_006478_160 Hb_000450_130--Hb_006478_160 Hb_004223_040 Hb_004223_040 Hb_000450_130--Hb_004223_040 Hb_138455_010 Hb_138455_010 Hb_000816_230--Hb_138455_010 Hb_001386_050 Hb_001386_050 Hb_000816_230--Hb_001386_050 Hb_000300_390 Hb_000300_390 Hb_000816_230--Hb_000300_390 Hb_000110_170 Hb_000110_170 Hb_000816_230--Hb_000110_170 Hb_000878_020 Hb_000878_020 Hb_000816_230--Hb_000878_020 Hb_146225_010 Hb_146225_010 Hb_000816_230--Hb_146225_010 Hb_005391_030 Hb_005391_030 Hb_000230_150--Hb_005391_030 Hb_000356_090 Hb_000356_090 Hb_000230_150--Hb_000356_090 Hb_000230_150--Hb_000450_130 Hb_002838_030 Hb_002838_030 Hb_000230_150--Hb_002838_030 Hb_001269_490 Hb_001269_490 Hb_000230_150--Hb_001269_490 Hb_000915_120 Hb_000915_120 Hb_000230_150--Hb_000915_120 Hb_002631_020 Hb_002631_020 Hb_001882_070--Hb_002631_020 Hb_006452_040 Hb_006452_040 Hb_001882_070--Hb_006452_040 Hb_003018_050 Hb_003018_050 Hb_001882_070--Hb_003018_050 Hb_007416_020 Hb_007416_020 Hb_001882_070--Hb_007416_020 Hb_000441_190 Hb_000441_190 Hb_001882_070--Hb_000441_190 Hb_000283_110 Hb_000283_110 Hb_001882_070--Hb_000283_110 Hb_005045_070 Hb_005045_070 Hb_000836_010--Hb_005045_070 Hb_002324_010 Hb_002324_010 Hb_000836_010--Hb_002324_010 Hb_001158_150 Hb_001158_150 Hb_000836_010--Hb_001158_150 Hb_000836_010--Hb_006452_040 Hb_001225_010 Hb_001225_010 Hb_000836_010--Hb_001225_010 Hb_003376_190 Hb_003376_190 Hb_000836_010--Hb_003376_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.8016 5.84085 2.58399 23.724 7.90341 5.08925
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.4648 73.9297 28.2805 12.525 5.39555

CAGE analysis