Hb_000230_150

Information

Type -
Description -
Location Contig230: 185252-189096
Sequence    

Annotation

kegg
ID rcu:RCOM_0679120
description sugar transporter, putative (EC:1.3.1.74)
nr
ID XP_002516838.1
description sugar transporter, putative [Ricinus communis]
swissprot
ID Q8LBI9
description Sugar transporter ERD6-like 16 OS=Arabidopsis thaliana GN=At5g18840 PE=2 SV=2
trembl
ID B9RSW9
description Sugar transporter, putative OS=Ricinus communis GN=RCOM_0679120 PE=3 SV=1
Gene Ontology
ID GO:0016021
description sugar transporter erd6-like 16 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24001: 185319-189108 , PASA_asmbl_24002: 188114-188362
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000230_150 0.0 - - sugar transporter, putative [Ricinus communis]
2 Hb_005391_030 0.1117408226 - - putative cytidine/deoxycytidylate deaminase family protein [Zea mays]
3 Hb_000356_090 0.1161657271 - - PREDICTED: uncharacterized protein At2g38710 [Jatropha curcas]
4 Hb_000450_130 0.1300055082 - - PREDICTED: uncharacterized protein LOC105630216 [Jatropha curcas]
5 Hb_002838_030 0.1316077791 - - 40S ribosomal protein S25A [Hevea brasiliensis]
6 Hb_001269_490 0.1364380964 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000915_120 0.1434940434 - - Peptidylprolyl cis/trans isomerase [Theobroma cacao]
8 Hb_004125_110 0.1450116649 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
9 Hb_000239_030 0.1462221374 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
10 Hb_001155_040 0.1513811007 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
11 Hb_000084_260 0.1516292198 - - PREDICTED: replication protein A 14 kDa subunit A-like [Jatropha curcas]
12 Hb_006915_040 0.1526844821 - - PREDICTED: prefoldin subunit 6 [Eucalyptus grandis]
13 Hb_000087_130 0.1545713677 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Jatropha curcas]
14 Hb_000363_480 0.1552843515 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Fragaria vesca subsp. vesca]
15 Hb_005000_180 0.1554001168 - - hypothetical protein JCGZ_07408 [Jatropha curcas]
16 Hb_000576_060 0.1558170978 - - truncated hemoglobin [Populus tremula x Populus tremuloides]
17 Hb_006452_040 0.1574409806 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
18 Hb_000617_090 0.1599523909 - - hypoia-responsive family protein 4 [Hevea brasiliensis]
19 Hb_005663_120 0.1601111025 - - PREDICTED: uncharacterized protein LOC105635265 [Jatropha curcas]
20 Hb_001085_270 0.1617636676 - - 60S ribosomal protein L13aA [Hevea brasiliensis]

Gene co-expression network

sample Hb_000230_150 Hb_000230_150 Hb_005391_030 Hb_005391_030 Hb_000230_150--Hb_005391_030 Hb_000356_090 Hb_000356_090 Hb_000230_150--Hb_000356_090 Hb_000450_130 Hb_000450_130 Hb_000230_150--Hb_000450_130 Hb_002838_030 Hb_002838_030 Hb_000230_150--Hb_002838_030 Hb_001269_490 Hb_001269_490 Hb_000230_150--Hb_001269_490 Hb_000915_120 Hb_000915_120 Hb_000230_150--Hb_000915_120 Hb_000193_120 Hb_000193_120 Hb_005391_030--Hb_000193_120 Hb_005391_030--Hb_000356_090 Hb_000103_010 Hb_000103_010 Hb_005391_030--Hb_000103_010 Hb_001085_270 Hb_001085_270 Hb_005391_030--Hb_001085_270 Hb_180074_010 Hb_180074_010 Hb_005391_030--Hb_180074_010 Hb_007441_260 Hb_007441_260 Hb_005391_030--Hb_007441_260 Hb_000087_130 Hb_000087_130 Hb_000356_090--Hb_000087_130 Hb_006915_040 Hb_006915_040 Hb_000356_090--Hb_006915_040 Hb_000189_240 Hb_000189_240 Hb_000356_090--Hb_000189_240 Hb_000258_250 Hb_000258_250 Hb_000356_090--Hb_000258_250 Hb_000317_070 Hb_000317_070 Hb_000356_090--Hb_000317_070 Hb_015807_100 Hb_015807_100 Hb_000450_130--Hb_015807_100 Hb_000363_480 Hb_000363_480 Hb_000450_130--Hb_000363_480 Hb_008921_020 Hb_008921_020 Hb_000450_130--Hb_008921_020 Hb_000417_360 Hb_000417_360 Hb_000450_130--Hb_000417_360 Hb_006478_160 Hb_006478_160 Hb_000450_130--Hb_006478_160 Hb_004223_040 Hb_004223_040 Hb_000450_130--Hb_004223_040 Hb_000997_120 Hb_000997_120 Hb_002838_030--Hb_000997_120 Hb_007120_090 Hb_007120_090 Hb_002838_030--Hb_007120_090 Hb_002838_030--Hb_000915_120 Hb_000948_220 Hb_000948_220 Hb_002838_030--Hb_000948_220 Hb_003020_330 Hb_003020_330 Hb_002838_030--Hb_003020_330 Hb_002838_030--Hb_000087_130 Hb_027684_020 Hb_027684_020 Hb_001269_490--Hb_027684_020 Hb_001269_490--Hb_002838_030 Hb_001269_490--Hb_000997_120 Hb_004543_040 Hb_004543_040 Hb_001269_490--Hb_004543_040 Hb_000116_040 Hb_000116_040 Hb_001269_490--Hb_000116_040 Hb_004125_110 Hb_004125_110 Hb_001269_490--Hb_004125_110 Hb_000203_020 Hb_000203_020 Hb_000915_120--Hb_000203_020 Hb_002006_130 Hb_002006_130 Hb_000915_120--Hb_002006_130 Hb_002588_010 Hb_002588_010 Hb_000915_120--Hb_002588_010 Hb_006588_080 Hb_006588_080 Hb_000915_120--Hb_006588_080 Hb_000062_390 Hb_000062_390 Hb_000915_120--Hb_000062_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.88469 0.778009 2.24346 4.61071 1.18233 1.73235
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.30006 13.8052 6.33408 4.75013 0.300385

CAGE analysis