Hb_000003_720

Information

Type -
Description -
Location Contig3: 555886-557471
Sequence    

Annotation

kegg
ID pop:POPTR_0003s04720g
description hypothetical protein
nr
ID XP_006385450.1
description hypothetical protein POPTR_0003s04720g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GPN2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s04720g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_720 0.0 - - hypothetical protein POPTR_0003s04720g [Populus trichocarpa]
2 Hb_020581_010 0.1258883684 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_101733_030 0.1280718533 - - PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
4 Hb_006637_070 0.1297255262 - - PREDICTED: pentatricopeptide repeat-containing protein At2g37230 [Jatropha curcas]
5 Hb_014109_040 0.1307330909 - - PREDICTED: probable folylpolyglutamate synthase [Jatropha curcas]
6 Hb_038172_010 0.1323038333 desease resistance Gene Name: AAA PREDICTED: cell division control protein 48 homolog B [Jatropha curcas]
7 Hb_005784_040 0.1366513122 - - PREDICTED: uncharacterized protein LOC105645160 isoform X1 [Jatropha curcas]
8 Hb_001215_040 0.1371553025 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000610_050 0.1390731571 - - skp1, putative [Ricinus communis]
10 Hb_027472_040 0.1393346507 - - SKP1 [Hevea brasiliensis]
11 Hb_000312_080 0.1402010786 - - PREDICTED: transmembrane protein 97-like [Jatropha curcas]
12 Hb_000680_160 0.1404825436 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
13 Hb_007576_080 0.1407563943 - - PREDICTED: uncharacterized protein LOC105643972 [Jatropha curcas]
14 Hb_000530_010 0.1427104384 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03 [Jatropha curcas]
15 Hb_002893_050 0.1436106943 - - hypothetical protein POPTR_0006s26510g [Populus trichocarpa]
16 Hb_001691_140 0.1437177597 - - mitochondrial 50S ribosomal protein L21 [Hevea brasiliensis]
17 Hb_002346_010 0.1441239426 - - -
18 Hb_109484_010 0.1444169291 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
19 Hb_181385_010 0.1457100178 - - PREDICTED: uncharacterized protein LOC105650319 [Jatropha curcas]
20 Hb_000329_110 0.1462617096 - - PREDICTED: uncharacterized protein LOC105643142 [Jatropha curcas]

Gene co-expression network

sample Hb_000003_720 Hb_000003_720 Hb_020581_010 Hb_020581_010 Hb_000003_720--Hb_020581_010 Hb_101733_030 Hb_101733_030 Hb_000003_720--Hb_101733_030 Hb_006637_070 Hb_006637_070 Hb_000003_720--Hb_006637_070 Hb_014109_040 Hb_014109_040 Hb_000003_720--Hb_014109_040 Hb_038172_010 Hb_038172_010 Hb_000003_720--Hb_038172_010 Hb_005784_040 Hb_005784_040 Hb_000003_720--Hb_005784_040 Hb_000342_100 Hb_000342_100 Hb_020581_010--Hb_000342_100 Hb_000003_080 Hb_000003_080 Hb_020581_010--Hb_000003_080 Hb_000272_020 Hb_000272_020 Hb_020581_010--Hb_000272_020 Hb_002253_100 Hb_002253_100 Hb_020581_010--Hb_002253_100 Hb_002893_050 Hb_002893_050 Hb_020581_010--Hb_002893_050 Hb_001842_100 Hb_001842_100 Hb_020581_010--Hb_001842_100 Hb_007576_080 Hb_007576_080 Hb_101733_030--Hb_007576_080 Hb_000907_110 Hb_000907_110 Hb_101733_030--Hb_000907_110 Hb_002346_010 Hb_002346_010 Hb_101733_030--Hb_002346_010 Hb_004787_110 Hb_004787_110 Hb_101733_030--Hb_004787_110 Hb_000402_080 Hb_000402_080 Hb_101733_030--Hb_000402_080 Hb_001104_160 Hb_001104_160 Hb_101733_030--Hb_001104_160 Hb_003994_120 Hb_003994_120 Hb_006637_070--Hb_003994_120 Hb_001489_090 Hb_001489_090 Hb_006637_070--Hb_001489_090 Hb_003465_030 Hb_003465_030 Hb_006637_070--Hb_003465_030 Hb_006570_080 Hb_006570_080 Hb_006637_070--Hb_006570_080 Hb_023001_040 Hb_023001_040 Hb_006637_070--Hb_023001_040 Hb_007423_050 Hb_007423_050 Hb_006637_070--Hb_007423_050 Hb_000589_120 Hb_000589_120 Hb_014109_040--Hb_000589_120 Hb_003125_120 Hb_003125_120 Hb_014109_040--Hb_003125_120 Hb_014109_040--Hb_007576_080 Hb_000563_230 Hb_000563_230 Hb_014109_040--Hb_000563_230 Hb_003935_020 Hb_003935_020 Hb_014109_040--Hb_003935_020 Hb_000334_280 Hb_000334_280 Hb_014109_040--Hb_000334_280 Hb_001481_090 Hb_001481_090 Hb_038172_010--Hb_001481_090 Hb_003780_030 Hb_003780_030 Hb_038172_010--Hb_003780_030 Hb_002585_040 Hb_002585_040 Hb_038172_010--Hb_002585_040 Hb_027472_040 Hb_027472_040 Hb_038172_010--Hb_027472_040 Hb_038172_010--Hb_014109_040 Hb_038172_010--Hb_000342_100 Hb_002631_280 Hb_002631_280 Hb_005784_040--Hb_002631_280 Hb_139294_010 Hb_139294_010 Hb_005784_040--Hb_139294_010 Hb_000116_450 Hb_000116_450 Hb_005784_040--Hb_000116_450 Hb_000003_540 Hb_000003_540 Hb_005784_040--Hb_000003_540 Hb_001357_150 Hb_001357_150 Hb_005784_040--Hb_001357_150 Hb_001278_100 Hb_001278_100 Hb_005784_040--Hb_001278_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.42997 1.45944 0.496746 1.95651 1.76696 0.774
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.57948 3.06717 0.772483 1.82103 0.855335

CAGE analysis