Hb_000811_060

Information

Type -
Description -
Location Contig811: 55184-77243
Sequence    

Annotation

kegg
ID rcu:RCOM_1197660
description zinc finger protein, putative
nr
ID XP_012093030.1
description PREDICTED: uncharacterized protein LOC105650696 [Jatropha curcas]
swissprot
ID O14099
description Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2F3.16 PE=3 SV=1
trembl
ID A0A067J8N9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05910 PE=4 SV=1
Gene Ontology
ID GO:0008270
description zinc finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59246: 55295-55585 , PASA_asmbl_59247: 57156-57315 , PASA_asmbl_59248: 63584-67751
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000811_060 0.0 - - PREDICTED: uncharacterized protein LOC105650696 [Jatropha curcas]
2 Hb_012022_060 0.0850059665 - - PREDICTED: uncharacterized protein LOC105646588 isoform X2 [Jatropha curcas]
3 Hb_006839_010 0.0861077345 - - PREDICTED: importin subunit beta-1-like [Jatropha curcas]
4 Hb_004044_050 0.0873497355 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]
5 Hb_000494_050 0.090498925 - - cationic amino acid transporter, putative [Ricinus communis]
6 Hb_002609_080 0.0907807362 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
7 Hb_000123_180 0.0914614056 - - 2-oxoglutarate dehydrogenase, putative [Ricinus communis]
8 Hb_000934_210 0.0924342908 - - suppressor of ty, putative [Ricinus communis]
9 Hb_002521_020 0.0935454967 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03100, mitochondrial-like isoform X2 [Jatropha curcas]
10 Hb_002639_040 0.0936587517 - - PREDICTED: T-complex protein 1 subunit beta [Jatropha curcas]
11 Hb_009288_020 0.0940648315 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
12 Hb_010180_060 0.0941831509 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
13 Hb_007441_160 0.0952492942 - - RNA binding protein, putative [Ricinus communis]
14 Hb_000059_230 0.0956142291 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
15 Hb_000928_090 0.0969836964 - - PREDICTED: septin and tuftelin-interacting protein 1 homolog 1 [Jatropha curcas]
16 Hb_000958_050 0.0987609647 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
17 Hb_000363_300 0.0989339515 - - PREDICTED: protein ENHANCED DOWNY MILDEW 2 isoform X1 [Jatropha curcas]
18 Hb_005215_010 0.0993642883 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
19 Hb_123531_010 0.0995666543 - - PREDICTED: nuclear pore complex protein NUP98A isoform X1 [Jatropha curcas]
20 Hb_012244_020 0.1001692388 - - calpain, putative [Ricinus communis]

Gene co-expression network

sample Hb_000811_060 Hb_000811_060 Hb_012022_060 Hb_012022_060 Hb_000811_060--Hb_012022_060 Hb_006839_010 Hb_006839_010 Hb_000811_060--Hb_006839_010 Hb_004044_050 Hb_004044_050 Hb_000811_060--Hb_004044_050 Hb_000494_050 Hb_000494_050 Hb_000811_060--Hb_000494_050 Hb_002609_080 Hb_002609_080 Hb_000811_060--Hb_002609_080 Hb_000123_180 Hb_000123_180 Hb_000811_060--Hb_000123_180 Hb_000363_300 Hb_000363_300 Hb_012022_060--Hb_000363_300 Hb_000934_210 Hb_000934_210 Hb_012022_060--Hb_000934_210 Hb_013459_020 Hb_013459_020 Hb_012022_060--Hb_013459_020 Hb_002357_070 Hb_002357_070 Hb_012022_060--Hb_002357_070 Hb_000009_030 Hb_000009_030 Hb_012022_060--Hb_000009_030 Hb_000664_120 Hb_000664_120 Hb_012022_060--Hb_000664_120 Hb_000059_230 Hb_000059_230 Hb_006839_010--Hb_000059_230 Hb_009288_020 Hb_009288_020 Hb_006839_010--Hb_009288_020 Hb_004374_110 Hb_004374_110 Hb_006839_010--Hb_004374_110 Hb_003040_050 Hb_003040_050 Hb_006839_010--Hb_003040_050 Hb_005215_010 Hb_005215_010 Hb_006839_010--Hb_005215_010 Hb_001377_100 Hb_001377_100 Hb_006839_010--Hb_001377_100 Hb_022425_030 Hb_022425_030 Hb_004044_050--Hb_022425_030 Hb_005214_140 Hb_005214_140 Hb_004044_050--Hb_005214_140 Hb_001329_250 Hb_001329_250 Hb_004044_050--Hb_001329_250 Hb_000347_300 Hb_000347_300 Hb_004044_050--Hb_000347_300 Hb_000110_350 Hb_000110_350 Hb_004044_050--Hb_000110_350 Hb_170077_010 Hb_170077_010 Hb_004044_050--Hb_170077_010 Hb_000494_050--Hb_000123_180 Hb_012055_040 Hb_012055_040 Hb_000494_050--Hb_012055_040 Hb_000494_050--Hb_005215_010 Hb_011819_020 Hb_011819_020 Hb_000494_050--Hb_011819_020 Hb_000317_100 Hb_000317_100 Hb_000494_050--Hb_000317_100 Hb_012518_070 Hb_012518_070 Hb_000494_050--Hb_012518_070 Hb_004306_120 Hb_004306_120 Hb_002609_080--Hb_004306_120 Hb_011021_050 Hb_011021_050 Hb_002609_080--Hb_011021_050 Hb_001691_200 Hb_001691_200 Hb_002609_080--Hb_001691_200 Hb_002609_080--Hb_001377_100 Hb_003849_280 Hb_003849_280 Hb_002609_080--Hb_003849_280 Hb_005181_050 Hb_005181_050 Hb_002609_080--Hb_005181_050 Hb_000123_180--Hb_011819_020 Hb_012632_010 Hb_012632_010 Hb_000123_180--Hb_012632_010 Hb_002890_130 Hb_002890_130 Hb_000123_180--Hb_002890_130 Hb_004019_120 Hb_004019_120 Hb_000123_180--Hb_004019_120 Hb_000123_180--Hb_012518_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.16562 4.75112 2.85229 3.30616 3.17465 1.88987
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.84226 1.20665 2.869 3.56742 5.66919

CAGE analysis