Hb_000442_110

Information

Type -
Description -
Location Contig442: 118634-120076
Sequence    

Annotation

kegg
ID pop:POPTR_0010s18960g
description POPTRDRAFT_833745; hypothetical protein
nr
ID XP_002315124.1
description hypothetical protein POPTR_0010s18960g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HYJ0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s18960g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42701: 117913-120268
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000442_110 0.0 - - hypothetical protein POPTR_0010s18960g [Populus trichocarpa]
2 Hb_000123_270 0.239078785 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000584_020 0.2444003397 - - hypothetical protein PHAVU_002G233500g, partial [Phaseolus vulgaris]
4 Hb_015941_050 0.2463381975 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000523_110 0.2464000222 - - PREDICTED: probable polyamine oxidase 4 [Jatropha curcas]
6 Hb_000463_130 0.2482708927 - - unnamed protein product [Coffea canephora]
7 Hb_001635_130 0.2529964724 - - PREDICTED: 60S ribosomal protein L28-2-like [Jatropha curcas]
8 Hb_002811_090 0.2592175708 - - 40S ribosomal protein S24A [Hevea brasiliensis]
9 Hb_001301_050 0.262750167 - - -
10 Hb_001322_070 0.262758869 - - protein with unknown function [Ricinus communis]
11 Hb_000005_300 0.2673726688 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000215_330 0.2674632647 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
13 Hb_000175_260 0.270268972 - - PREDICTED: glucan endo-1,3-beta-glucosidase 14-like [Populus euphratica]
14 Hb_154141_030 0.2712191031 - - PREDICTED: histone H2AX [Populus euphratica]
15 Hb_000318_080 0.271542169 - - PREDICTED: la-related protein 6C [Jatropha curcas]
16 Hb_008206_100 0.2733135855 - - PREDICTED: uncharacterized protein LOC105638302 [Jatropha curcas]
17 Hb_000676_140 0.2734076067 - - structural constituent of ribosome, putative [Ricinus communis]
18 Hb_001862_120 0.2735495237 - - PREDICTED: aspartic proteinase-like protein 2 [Jatropha curcas]
19 Hb_000473_020 0.2753820717 - - expressed protein, putative [Ricinus communis]
20 Hb_009680_020 0.2763124202 - - PREDICTED: 40S ribosomal protein S10 [Jatropha curcas]

Gene co-expression network

sample Hb_000442_110 Hb_000442_110 Hb_000123_270 Hb_000123_270 Hb_000442_110--Hb_000123_270 Hb_000584_020 Hb_000584_020 Hb_000442_110--Hb_000584_020 Hb_015941_050 Hb_015941_050 Hb_000442_110--Hb_015941_050 Hb_000523_110 Hb_000523_110 Hb_000442_110--Hb_000523_110 Hb_000463_130 Hb_000463_130 Hb_000442_110--Hb_000463_130 Hb_001635_130 Hb_001635_130 Hb_000442_110--Hb_001635_130 Hb_003020_210 Hb_003020_210 Hb_000123_270--Hb_003020_210 Hb_005000_330 Hb_005000_330 Hb_000123_270--Hb_005000_330 Hb_000948_200 Hb_000948_200 Hb_000123_270--Hb_000948_200 Hb_003758_020 Hb_003758_020 Hb_000123_270--Hb_003758_020 Hb_004093_020 Hb_004093_020 Hb_000123_270--Hb_004093_020 Hb_083380_020 Hb_083380_020 Hb_000123_270--Hb_083380_020 Hb_001357_100 Hb_001357_100 Hb_000584_020--Hb_001357_100 Hb_178227_010 Hb_178227_010 Hb_000584_020--Hb_178227_010 Hb_000473_020 Hb_000473_020 Hb_000584_020--Hb_000473_020 Hb_001754_070 Hb_001754_070 Hb_000584_020--Hb_001754_070 Hb_005667_040 Hb_005667_040 Hb_000584_020--Hb_005667_040 Hb_000352_290 Hb_000352_290 Hb_000584_020--Hb_000352_290 Hb_002205_170 Hb_002205_170 Hb_015941_050--Hb_002205_170 Hb_005144_010 Hb_005144_010 Hb_015941_050--Hb_005144_010 Hb_001322_070 Hb_001322_070 Hb_015941_050--Hb_001322_070 Hb_001584_240 Hb_001584_240 Hb_015941_050--Hb_001584_240 Hb_008206_100 Hb_008206_100 Hb_015941_050--Hb_008206_100 Hb_000483_400 Hb_000483_400 Hb_015941_050--Hb_000483_400 Hb_001450_030 Hb_001450_030 Hb_000523_110--Hb_001450_030 Hb_000152_210 Hb_000152_210 Hb_000523_110--Hb_000152_210 Hb_012022_140 Hb_012022_140 Hb_000523_110--Hb_012022_140 Hb_001269_470 Hb_001269_470 Hb_000523_110--Hb_001269_470 Hb_000005_300 Hb_000005_300 Hb_000523_110--Hb_000005_300 Hb_015807_160 Hb_015807_160 Hb_000523_110--Hb_015807_160 Hb_000215_330 Hb_000215_330 Hb_000463_130--Hb_000215_330 Hb_016734_070 Hb_016734_070 Hb_000463_130--Hb_016734_070 Hb_002314_010 Hb_002314_010 Hb_000463_130--Hb_002314_010 Hb_000130_100 Hb_000130_100 Hb_000463_130--Hb_000130_100 Hb_000975_230 Hb_000975_230 Hb_000463_130--Hb_000975_230 Hb_003376_190 Hb_003376_190 Hb_000463_130--Hb_003376_190 Hb_027684_020 Hb_027684_020 Hb_001635_130--Hb_027684_020 Hb_002900_130 Hb_002900_130 Hb_001635_130--Hb_002900_130 Hb_154141_030 Hb_154141_030 Hb_001635_130--Hb_154141_030 Hb_005054_040 Hb_005054_040 Hb_001635_130--Hb_005054_040 Hb_001301_050 Hb_001301_050 Hb_001635_130--Hb_001301_050 Hb_002631_260 Hb_002631_260 Hb_001635_130--Hb_002631_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.17382 0.169155 0.72713 1.98065 0.164001 0.871003
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.618597 3.40135 0 0.208943 0.848837

CAGE analysis