Hb_000413_140

Information

Type -
Description -
Location Contig413: 146786-147253
Sequence    

Annotation

kegg
ID rcu:RCOM_0906580
description transcription factor, putative
nr
ID XP_002518577.1
description transcription factor, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RXV8
description Transcription factor, putative OS=Ricinus communis GN=RCOM_0906580 PE=4 SV=1
Gene Ontology
ID GO:0003700
description c2h2 zinc finger protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000413_140 0.0 - - transcription factor, putative [Ricinus communis]
2 Hb_003095_060 0.2557025609 - - hypothetical protein VITISV_030841 [Vitis vinifera]
3 Hb_000710_080 0.2644266471 - - hypothetical protein EUTSA_v10023022mg [Eutrema salsugineum]
4 Hb_007632_190 0.2682017804 - - PREDICTED: inactive beta-amylase 4, chloroplastic isoform X5 [Camelina sativa]
5 Hb_002620_010 0.2740247201 - - hypothetical protein POPTR_0004s18130g [Populus trichocarpa]
6 Hb_000130_380 0.2796074279 - - PREDICTED: uncharacterized protein LOC105635736 isoform X1 [Jatropha curcas]
7 Hb_026549_010 0.2815527304 - - -
8 Hb_078806_010 0.2823497679 - - hypothetical protein CISIN_1g031839mg [Citrus sinensis]
9 Hb_177215_040 0.2840915542 - - PREDICTED: DET1- and DDB1-associated protein 1 isoform X1 [Jatropha curcas]
10 Hb_002316_130 0.285876656 - - hypothetical protein POPTR_0015s08440g [Populus trichocarpa]
11 Hb_002784_080 0.2861822851 - - PREDICTED: DNA replication complex GINS protein PSF3-like [Jatropha curcas]
12 Hb_001247_280 0.2884386639 - - PREDICTED: uncharacterized protein LOC105632071 [Jatropha curcas]
13 Hb_009767_070 0.2892896826 - - PREDICTED: uncharacterized protein LOC105631980 [Jatropha curcas]
14 Hb_000318_020 0.2907391042 - - PREDICTED: sodium channel modifier 1-like [Jatropha curcas]
15 Hb_001534_050 0.2915598601 - - PREDICTED: uncharacterized protein LOC105642299 [Jatropha curcas]
16 Hb_001140_270 0.2921889902 - - hypothetical protein EUGRSUZ_E00166 [Eucalyptus grandis]
17 Hb_000735_180 0.2936779821 - - PREDICTED: putative quinone-oxidoreductase homolog, chloroplastic [Jatropha curcas]
18 Hb_156635_030 0.293836435 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial isoform X1 [Nelumbo nucifera]
19 Hb_000694_040 0.2961118824 - - Uncharacterized protein isoform 1 [Theobroma cacao]
20 Hb_001430_120 0.2976673701 - - PREDICTED: DNA polymerase delta subunit 4 [Jatropha curcas]

Gene co-expression network

sample Hb_000413_140 Hb_000413_140 Hb_003095_060 Hb_003095_060 Hb_000413_140--Hb_003095_060 Hb_000710_080 Hb_000710_080 Hb_000413_140--Hb_000710_080 Hb_007632_190 Hb_007632_190 Hb_000413_140--Hb_007632_190 Hb_002620_010 Hb_002620_010 Hb_000413_140--Hb_002620_010 Hb_000130_380 Hb_000130_380 Hb_000413_140--Hb_000130_380 Hb_026549_010 Hb_026549_010 Hb_000413_140--Hb_026549_010 Hb_002081_070 Hb_002081_070 Hb_003095_060--Hb_002081_070 Hb_156635_030 Hb_156635_030 Hb_003095_060--Hb_156635_030 Hb_002662_030 Hb_002662_030 Hb_003095_060--Hb_002662_030 Hb_003922_010 Hb_003922_010 Hb_003095_060--Hb_003922_010 Hb_000327_190 Hb_000327_190 Hb_003095_060--Hb_000327_190 Hb_002603_080 Hb_002603_080 Hb_003095_060--Hb_002603_080 Hb_009767_070 Hb_009767_070 Hb_000710_080--Hb_009767_070 Hb_007441_110 Hb_007441_110 Hb_000710_080--Hb_007441_110 Hb_000107_480 Hb_000107_480 Hb_000710_080--Hb_000107_480 Hb_000101_350 Hb_000101_350 Hb_000710_080--Hb_000101_350 Hb_003549_160 Hb_003549_160 Hb_000710_080--Hb_003549_160 Hb_001511_160 Hb_001511_160 Hb_000710_080--Hb_001511_160 Hb_003097_170 Hb_003097_170 Hb_007632_190--Hb_003097_170 Hb_000221_250 Hb_000221_250 Hb_007632_190--Hb_000221_250 Hb_001722_120 Hb_001722_120 Hb_007632_190--Hb_001722_120 Hb_001030_110 Hb_001030_110 Hb_007632_190--Hb_001030_110 Hb_011249_010 Hb_011249_010 Hb_007632_190--Hb_011249_010 Hb_005565_050 Hb_005565_050 Hb_007632_190--Hb_005565_050 Hb_007813_040 Hb_007813_040 Hb_002620_010--Hb_007813_040 Hb_000808_270 Hb_000808_270 Hb_002620_010--Hb_000808_270 Hb_000318_190 Hb_000318_190 Hb_002620_010--Hb_000318_190 Hb_003175_010 Hb_003175_010 Hb_002620_010--Hb_003175_010 Hb_143629_210 Hb_143629_210 Hb_002620_010--Hb_143629_210 Hb_000030_300 Hb_000030_300 Hb_002620_010--Hb_000030_300 Hb_000661_140 Hb_000661_140 Hb_000130_380--Hb_000661_140 Hb_002681_060 Hb_002681_060 Hb_000130_380--Hb_002681_060 Hb_004109_040 Hb_004109_040 Hb_000130_380--Hb_004109_040 Hb_002639_150 Hb_002639_150 Hb_000130_380--Hb_002639_150 Hb_000085_240 Hb_000085_240 Hb_000130_380--Hb_000085_240 Hb_000710_020 Hb_000710_020 Hb_000130_380--Hb_000710_020 Hb_002217_470 Hb_002217_470 Hb_026549_010--Hb_002217_470 Hb_000868_050 Hb_000868_050 Hb_026549_010--Hb_000868_050 Hb_016734_080 Hb_016734_080 Hb_026549_010--Hb_016734_080 Hb_001054_020 Hb_001054_020 Hb_026549_010--Hb_001054_020 Hb_000654_030 Hb_000654_030 Hb_026549_010--Hb_000654_030 Hb_000622_200 Hb_000622_200 Hb_026549_010--Hb_000622_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.121634 0.454669 0.0783035 0.360471 0.380102
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.299908 0.235583 0.196688 0.147909 0

CAGE analysis