Hb_000710_080

Information

Type -
Description -
Location Contig710: 93305-94257
Sequence    

Annotation

kegg
ID eus:EUTSA_v10023022mg
description hypothetical protein
nr
ID XP_006409412.1
description hypothetical protein EUTSA_v10023022mg [Eutrema salsugineum]
swissprot
ID P0C2F6
description Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1
trembl
ID V4LJY1
description Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10023022mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000710_080 0.0 - - hypothetical protein EUTSA_v10023022mg [Eutrema salsugineum]
2 Hb_009767_070 0.2109431572 - - PREDICTED: uncharacterized protein LOC105631980 [Jatropha curcas]
3 Hb_007441_110 0.2148646681 - - PREDICTED: F-box/LRR-repeat protein At3g58900-like [Jatropha curcas]
4 Hb_000107_480 0.2235501586 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 6-like isoform X1 [Jatropha curcas]
5 Hb_000101_350 0.2324375806 desease resistance Gene Name: NB-ARC NB-ARC domain-containing disease resistance protein, putative [Theobroma cacao]
6 Hb_003549_160 0.2327691241 - - Protein FAM18B, putative [Ricinus communis]
7 Hb_001511_160 0.2344752234 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001999_080 0.2357612 - - CCCH-type zinc finger protein [Hevea brasiliensis]
9 Hb_144166_010 0.2366646421 - - PREDICTED: importin-13 [Jatropha curcas]
10 Hb_000003_300 0.2423453999 - - PREDICTED: uncharacterized protein LOC105631182 [Jatropha curcas]
11 Hb_000115_340 0.245366852 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
12 Hb_000163_240 0.2454326738 - - PREDICTED: protein OPI10 homolog [Jatropha curcas]
13 Hb_003849_140 0.2457671135 - - PREDICTED: uncharacterized protein LOC105644697 [Jatropha curcas]
14 Hb_003906_180 0.2459543936 - - unknown [Zea mays]
15 Hb_000915_060 0.2473966092 - - PREDICTED: uncharacterized protein LOC105628864 [Jatropha curcas]
16 Hb_001863_350 0.2487602265 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105630621 [Jatropha curcas]
17 Hb_005365_020 0.2506430744 - - hypothetical protein JCGZ_15105 [Jatropha curcas]
18 Hb_007254_020 0.2506948051 - - PREDICTED: uncharacterized protein LOC105629137 [Jatropha curcas]
19 Hb_006502_020 0.25093012 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Jatropha curcas]
20 Hb_000115_160 0.2520685682 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230 [Jatropha curcas]

Gene co-expression network

sample Hb_000710_080 Hb_000710_080 Hb_009767_070 Hb_009767_070 Hb_000710_080--Hb_009767_070 Hb_007441_110 Hb_007441_110 Hb_000710_080--Hb_007441_110 Hb_000107_480 Hb_000107_480 Hb_000710_080--Hb_000107_480 Hb_000101_350 Hb_000101_350 Hb_000710_080--Hb_000101_350 Hb_003549_160 Hb_003549_160 Hb_000710_080--Hb_003549_160 Hb_001511_160 Hb_001511_160 Hb_000710_080--Hb_001511_160 Hb_153553_030 Hb_153553_030 Hb_009767_070--Hb_153553_030 Hb_002600_020 Hb_002600_020 Hb_009767_070--Hb_002600_020 Hb_004312_010 Hb_004312_010 Hb_009767_070--Hb_004312_010 Hb_000951_100 Hb_000951_100 Hb_009767_070--Hb_000951_100 Hb_006615_050 Hb_006615_050 Hb_009767_070--Hb_006615_050 Hb_000081_010 Hb_000081_010 Hb_009767_070--Hb_000081_010 Hb_001410_020 Hb_001410_020 Hb_007441_110--Hb_001410_020 Hb_000260_180 Hb_000260_180 Hb_007441_110--Hb_000260_180 Hb_006588_210 Hb_006588_210 Hb_007441_110--Hb_006588_210 Hb_000130_240 Hb_000130_240 Hb_007441_110--Hb_000130_240 Hb_021576_110 Hb_021576_110 Hb_007441_110--Hb_021576_110 Hb_000087_060 Hb_000087_060 Hb_007441_110--Hb_000087_060 Hb_005725_030 Hb_005725_030 Hb_000107_480--Hb_005725_030 Hb_013405_150 Hb_013405_150 Hb_000107_480--Hb_013405_150 Hb_001409_060 Hb_001409_060 Hb_000107_480--Hb_001409_060 Hb_002056_100 Hb_002056_100 Hb_000107_480--Hb_002056_100 Hb_000120_380 Hb_000120_380 Hb_000107_480--Hb_000120_380 Hb_000663_080 Hb_000663_080 Hb_000107_480--Hb_000663_080 Hb_008112_030 Hb_008112_030 Hb_000101_350--Hb_008112_030 Hb_000115_160 Hb_000115_160 Hb_000101_350--Hb_000115_160 Hb_000331_330 Hb_000331_330 Hb_000101_350--Hb_000331_330 Hb_007676_100 Hb_007676_100 Hb_000101_350--Hb_007676_100 Hb_006882_020 Hb_006882_020 Hb_000101_350--Hb_006882_020 Hb_000960_050 Hb_000960_050 Hb_000101_350--Hb_000960_050 Hb_002986_100 Hb_002986_100 Hb_003549_160--Hb_002986_100 Hb_001720_040 Hb_001720_040 Hb_003549_160--Hb_001720_040 Hb_001153_210 Hb_001153_210 Hb_003549_160--Hb_001153_210 Hb_000111_170 Hb_000111_170 Hb_003549_160--Hb_000111_170 Hb_000336_210 Hb_000336_210 Hb_003549_160--Hb_000336_210 Hb_000803_270 Hb_000803_270 Hb_003549_160--Hb_000803_270 Hb_006501_050 Hb_006501_050 Hb_001511_160--Hb_006501_050 Hb_000003_170 Hb_000003_170 Hb_001511_160--Hb_000003_170 Hb_005162_110 Hb_005162_110 Hb_001511_160--Hb_005162_110 Hb_000959_220 Hb_000959_220 Hb_001511_160--Hb_000959_220 Hb_000012_270 Hb_000012_270 Hb_001511_160--Hb_000012_270 Hb_001824_080 Hb_001824_080 Hb_001511_160--Hb_001824_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.241154 0.329623 0.0621336 0.268994 0.231369
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0805846 0.190053 0.113077 0.077318 0.125338

CAGE analysis