Hb_006501_050

Information

Type -
Description -
Location Contig6501: 38229-48166
Sequence    

Annotation

kegg
ID pop:POPTR_0018s09330g
description POPTRDRAFT_835890; HOBBIT family protein
nr
ID XP_012076778.1
description PREDICTED: cell division cycle protein 27 homolog B [Jatropha curcas]
swissprot
ID Q8LGU6
description Cell division cycle protein 27 homolog B OS=Arabidopsis thaliana GN=CDC27B PE=1 SV=1
trembl
ID A0A067KPL9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07300 PE=4 SV=1
Gene Ontology
ID GO:0005819
description cell division cycle protein 27 homolog b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52526: 41691-42074 , PASA_asmbl_52527: 47628-48269
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006501_050 0.0 - - PREDICTED: cell division cycle protein 27 homolog B [Jatropha curcas]
2 Hb_001511_160 0.096910425 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004339_040 0.0991987184 - - hypothetical protein POPTR_0162s00290g, partial [Populus trichocarpa]
4 Hb_000880_070 0.1064638886 - - gamma-tubulin complex component, putative [Ricinus communis]
5 Hb_000364_100 0.1148232324 - - PREDICTED: uncharacterized protein LOC105639739 [Jatropha curcas]
6 Hb_029388_010 0.1194313802 transcription factor TF Family: C2C2-CO-like PREDICTED: zinc finger protein CONSTANS-LIKE 15-like [Jatropha curcas]
7 Hb_001824_080 0.1197443504 - - PREDICTED: 2-aminoethanethiol dioxygenase isoform X1 [Jatropha curcas]
8 Hb_002343_040 0.1224278591 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_004109_120 0.1228554626 - - PREDICTED: kinesin-related protein 6 isoform X1 [Jatropha curcas]
10 Hb_000300_180 0.1232359552 - - transcription initiation factor brf1, putative [Ricinus communis]
11 Hb_138435_010 0.1241927898 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
12 Hb_005162_110 0.1245559115 - - PREDICTED: uncharacterized protein LOC105648430 [Jatropha curcas]
13 Hb_000826_030 0.1272888634 - - PREDICTED: putative tRNA pseudouridine synthase isoform X1 [Jatropha curcas]
14 Hb_000254_100 0.1273749327 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
15 Hb_000304_070 0.1279709915 - - non-canonical ubiquitin conjugating enzyme, putative [Ricinus communis]
16 Hb_000866_310 0.1281415194 - - PREDICTED: neural Wiskott-Aldrich syndrome protein [Jatropha curcas]
17 Hb_007821_020 0.1282549915 - - PREDICTED: 5'-nucleotidase domain-containing protein DDB_G0275467 isoform X2 [Jatropha curcas]
18 Hb_012438_030 0.1288362125 - - PREDICTED: protein sym-1 [Jatropha curcas]
19 Hb_002374_230 0.1292470338 - - PREDICTED: centromere-associated protein E [Jatropha curcas]
20 Hb_030414_040 0.1297701001 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_006501_050 Hb_006501_050 Hb_001511_160 Hb_001511_160 Hb_006501_050--Hb_001511_160 Hb_004339_040 Hb_004339_040 Hb_006501_050--Hb_004339_040 Hb_000880_070 Hb_000880_070 Hb_006501_050--Hb_000880_070 Hb_000364_100 Hb_000364_100 Hb_006501_050--Hb_000364_100 Hb_029388_010 Hb_029388_010 Hb_006501_050--Hb_029388_010 Hb_001824_080 Hb_001824_080 Hb_006501_050--Hb_001824_080 Hb_000003_170 Hb_000003_170 Hb_001511_160--Hb_000003_170 Hb_005162_110 Hb_005162_110 Hb_001511_160--Hb_005162_110 Hb_000959_220 Hb_000959_220 Hb_001511_160--Hb_000959_220 Hb_000012_270 Hb_000012_270 Hb_001511_160--Hb_000012_270 Hb_001511_160--Hb_001824_080 Hb_004339_040--Hb_000880_070 Hb_004339_040--Hb_001824_080 Hb_004109_120 Hb_004109_120 Hb_004339_040--Hb_004109_120 Hb_004109_260 Hb_004109_260 Hb_004339_040--Hb_004109_260 Hb_001623_500 Hb_001623_500 Hb_004339_040--Hb_001623_500 Hb_005946_040 Hb_005946_040 Hb_004339_040--Hb_005946_040 Hb_000321_140 Hb_000321_140 Hb_000880_070--Hb_000321_140 Hb_004100_050 Hb_004100_050 Hb_000880_070--Hb_004100_050 Hb_002055_020 Hb_002055_020 Hb_000880_070--Hb_002055_020 Hb_000254_100 Hb_000254_100 Hb_000880_070--Hb_000254_100 Hb_000880_070--Hb_001824_080 Hb_000532_100 Hb_000532_100 Hb_000364_100--Hb_000532_100 Hb_004994_080 Hb_004994_080 Hb_000364_100--Hb_004994_080 Hb_000826_030 Hb_000826_030 Hb_000364_100--Hb_000826_030 Hb_001158_160 Hb_001158_160 Hb_000364_100--Hb_001158_160 Hb_000284_130 Hb_000284_130 Hb_000364_100--Hb_000284_130 Hb_011386_050 Hb_011386_050 Hb_000364_100--Hb_011386_050 Hb_001369_300 Hb_001369_300 Hb_029388_010--Hb_001369_300 Hb_011671_310 Hb_011671_310 Hb_029388_010--Hb_011671_310 Hb_005977_030 Hb_005977_030 Hb_029388_010--Hb_005977_030 Hb_001500_120 Hb_001500_120 Hb_029388_010--Hb_001500_120 Hb_000120_250 Hb_000120_250 Hb_029388_010--Hb_000120_250 Hb_001789_060 Hb_001789_060 Hb_029388_010--Hb_001789_060 Hb_001824_080--Hb_004109_120 Hb_001824_080--Hb_000254_100 Hb_001824_080--Hb_004109_260 Hb_000304_070 Hb_000304_070 Hb_001824_080--Hb_000304_070 Hb_007821_020 Hb_007821_020 Hb_001824_080--Hb_007821_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.719945 1.03934 4.0006 0.845938 1.28638 1.45062
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.23998 1.09579 1.00005 1.53872 1.56086

CAGE analysis