Hb_000081_010

Information

Type -
Description -
Location Contig81: 13181-15463
Sequence    

Annotation

kegg
ID pop:POPTR_0017s11340g
description POPTRDRAFT_808898; hypothetical protein
nr
ID KJB75764.1
description hypothetical protein B456_012G056000 [Gossypium raimondii]
swissprot
ID Q54S83
description NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 OS=Dictyostelium discoideum GN=midA PE=1 SV=1
trembl
ID A0A0D2V2B7
description Gossypium raimondii chromosome 12, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_012G056000 PE=4 SV=1
Gene Ontology
ID GO:0008270
description nadh dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000081_010 0.0 - - hypothetical protein B456_012G056000 [Gossypium raimondii]
2 Hb_004096_180 0.0845760724 - - PREDICTED: 14-3-3-like protein A [Jatropha curcas]
3 Hb_002872_030 0.0857039436 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
4 Hb_006588_070 0.089157857 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]
5 Hb_073973_130 0.0931869214 - - PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1 [Jatropha curcas]
6 Hb_000076_160 0.0957740117 - - PREDICTED: AP-5 complex subunit zeta-1 [Jatropha curcas]
7 Hb_014361_150 0.0978156449 - - PREDICTED: uncharacterized protein LOC105639827 [Jatropha curcas]
8 Hb_000951_100 0.098813999 - - PREDICTED: uncharacterized protein LOC103436565 isoform X1 [Malus domestica]
9 Hb_027428_010 0.0989896023 - - alpha-1,3-mannosyltransferase, putative [Ricinus communis]
10 Hb_000096_120 0.0999580406 - - PREDICTED: uncharacterized protein LOC105639993 [Jatropha curcas]
11 Hb_004586_140 0.100169559 - - PREDICTED: uncharacterized protein LOC105630689 [Jatropha curcas]
12 Hb_153553_030 0.101227896 - - PREDICTED: zinc finger protein GIS2 [Jatropha curcas]
13 Hb_021576_100 0.1043767191 - - Enoyl-CoA hydratase, mitochondrial precursor, putative [Ricinus communis]
14 Hb_000107_190 0.1047155657 - - 50S ribosomal protein L20 [Hevea brasiliensis]
15 Hb_003213_010 0.1050878769 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
16 Hb_000308_030 0.1070383083 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
17 Hb_009767_070 0.1076553549 - - PREDICTED: uncharacterized protein LOC105631980 [Jatropha curcas]
18 Hb_000879_180 0.1077585727 - - XPA-binding protein, putative [Ricinus communis]
19 Hb_000868_110 0.107782516 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
20 Hb_032920_060 0.1077997563 - - PREDICTED: mitotic checkpoint protein BUB3.1 [Jatropha curcas]

Gene co-expression network

sample Hb_000081_010 Hb_000081_010 Hb_004096_180 Hb_004096_180 Hb_000081_010--Hb_004096_180 Hb_002872_030 Hb_002872_030 Hb_000081_010--Hb_002872_030 Hb_006588_070 Hb_006588_070 Hb_000081_010--Hb_006588_070 Hb_073973_130 Hb_073973_130 Hb_000081_010--Hb_073973_130 Hb_000076_160 Hb_000076_160 Hb_000081_010--Hb_000076_160 Hb_014361_150 Hb_014361_150 Hb_000081_010--Hb_014361_150 Hb_004096_180--Hb_002872_030 Hb_000087_060 Hb_000087_060 Hb_004096_180--Hb_000087_060 Hb_000096_120 Hb_000096_120 Hb_004096_180--Hb_000096_120 Hb_002028_210 Hb_002028_210 Hb_004096_180--Hb_002028_210 Hb_000359_040 Hb_000359_040 Hb_004096_180--Hb_000359_040 Hb_027428_010 Hb_027428_010 Hb_004096_180--Hb_027428_010 Hb_002872_030--Hb_027428_010 Hb_010381_090 Hb_010381_090 Hb_002872_030--Hb_010381_090 Hb_008453_140 Hb_008453_140 Hb_002872_030--Hb_008453_140 Hb_007416_300 Hb_007416_300 Hb_002872_030--Hb_007416_300 Hb_002872_030--Hb_006588_070 Hb_002872_030--Hb_073973_130 Hb_000776_100 Hb_000776_100 Hb_006588_070--Hb_000776_100 Hb_006588_070--Hb_027428_010 Hb_022132_050 Hb_022132_050 Hb_006588_070--Hb_022132_050 Hb_001051_080 Hb_001051_080 Hb_006588_070--Hb_001051_080 Hb_006588_070--Hb_000096_120 Hb_000107_190 Hb_000107_190 Hb_073973_130--Hb_000107_190 Hb_073973_130--Hb_027428_010 Hb_073973_130--Hb_022132_050 Hb_005337_090 Hb_005337_090 Hb_073973_130--Hb_005337_090 Hb_000610_010 Hb_000610_010 Hb_073973_130--Hb_000610_010 Hb_005306_160 Hb_005306_160 Hb_000076_160--Hb_005306_160 Hb_000928_220 Hb_000928_220 Hb_000076_160--Hb_000928_220 Hb_000679_310 Hb_000679_310 Hb_000076_160--Hb_000679_310 Hb_000358_230 Hb_000358_230 Hb_000076_160--Hb_000358_230 Hb_000076_160--Hb_000087_060 Hb_001751_140 Hb_001751_140 Hb_000076_160--Hb_001751_140 Hb_000260_440 Hb_000260_440 Hb_014361_150--Hb_000260_440 Hb_002379_050 Hb_002379_050 Hb_014361_150--Hb_002379_050 Hb_004357_020 Hb_004357_020 Hb_014361_150--Hb_004357_020 Hb_000760_020 Hb_000760_020 Hb_014361_150--Hb_000760_020 Hb_000125_200 Hb_000125_200 Hb_014361_150--Hb_000125_200 Hb_014361_150--Hb_005306_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.55284 10.1143 12.0873 6.78075 7.03386 9.8221
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.66774 8.21347 5.83012 4.10678 2.5291

CAGE analysis