Hb_003095_060

Information

Type -
Description -
Location Contig3095: 39842-46184
Sequence    

Annotation

kegg
ID mtr:MTR_6g007870
description Phytoalexin-deficient 4-2 protein
nr
ID CAN60490.1
description hypothetical protein VITISV_030841 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5AQM5
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030841 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003095_060 0.0 - - hypothetical protein VITISV_030841 [Vitis vinifera]
2 Hb_002081_070 0.1571889583 - - PREDICTED: pyridoxal kinase [Jatropha curcas]
3 Hb_156635_030 0.1668177836 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial isoform X1 [Nelumbo nucifera]
4 Hb_002662_030 0.176863205 - - PREDICTED: mannose-P-dolichol utilization defect 1 protein homolog 2 [Jatropha curcas]
5 Hb_003922_010 0.1804729206 - - PREDICTED: probable phospholipid hydroperoxide glutathione peroxidase [Jatropha curcas]
6 Hb_000327_190 0.1808748345 - - PREDICTED: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2-like [Jatropha curcas]
7 Hb_002603_080 0.1865844046 - - hypothetical protein MTR_7g114400 [Medicago truncatula]
8 Hb_000621_070 0.1868957031 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
9 Hb_007017_090 0.1892231756 - - PREDICTED: coiled-coil domain-containing protein 186 [Jatropha curcas]
10 Hb_000028_590 0.1903069957 - - PREDICTED: putative serine/threonine-protein kinase [Jatropha curcas]
11 Hb_005306_170 0.1906658164 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
12 Hb_001427_110 0.1912940532 - - PREDICTED: LOW QUALITY PROTEIN: yrdC domain-containing protein, mitochondrial [Jatropha curcas]
13 Hb_007012_060 0.1913475818 - - PREDICTED: UPF0183 protein At3g51130 isoform X2 [Jatropha curcas]
14 Hb_001662_150 0.1920088437 - - Scaffold attachment factor B1 [Medicago truncatula]
15 Hb_005914_010 0.1956244933 - - PREDICTED: peroxisomal membrane protein PMP22 [Jatropha curcas]
16 Hb_034482_020 0.1965421555 - - PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic-like [Jatropha curcas]
17 Hb_000160_060 0.1967671073 - - unknown [Populus trichocarpa]
18 Hb_004668_020 0.1970756754 - - PREDICTED: uncharacterized protein LOC105630444 isoform X2 [Jatropha curcas]
19 Hb_005895_030 0.1976748033 - - PREDICTED: uncharacterized protein LOC105643388 [Jatropha curcas]
20 Hb_094608_010 0.198294519 - - PREDICTED: uncharacterized protein LOC105630444 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_003095_060 Hb_003095_060 Hb_002081_070 Hb_002081_070 Hb_003095_060--Hb_002081_070 Hb_156635_030 Hb_156635_030 Hb_003095_060--Hb_156635_030 Hb_002662_030 Hb_002662_030 Hb_003095_060--Hb_002662_030 Hb_003922_010 Hb_003922_010 Hb_003095_060--Hb_003922_010 Hb_000327_190 Hb_000327_190 Hb_003095_060--Hb_000327_190 Hb_002603_080 Hb_002603_080 Hb_003095_060--Hb_002603_080 Hb_000030_290 Hb_000030_290 Hb_002081_070--Hb_000030_290 Hb_005245_080 Hb_005245_080 Hb_002081_070--Hb_005245_080 Hb_001504_050 Hb_001504_050 Hb_002081_070--Hb_001504_050 Hb_150651_040 Hb_150651_040 Hb_002081_070--Hb_150651_040 Hb_002045_040 Hb_002045_040 Hb_002081_070--Hb_002045_040 Hb_003544_020 Hb_003544_020 Hb_002081_070--Hb_003544_020 Hb_002284_240 Hb_002284_240 Hb_156635_030--Hb_002284_240 Hb_001184_090 Hb_001184_090 Hb_156635_030--Hb_001184_090 Hb_156635_030--Hb_000327_190 Hb_000926_250 Hb_000926_250 Hb_156635_030--Hb_000926_250 Hb_002107_130 Hb_002107_130 Hb_156635_030--Hb_002107_130 Hb_000007_100 Hb_000007_100 Hb_156635_030--Hb_000007_100 Hb_002296_040 Hb_002296_040 Hb_002662_030--Hb_002296_040 Hb_002596_040 Hb_002596_040 Hb_002662_030--Hb_002596_040 Hb_000792_130 Hb_000792_130 Hb_002662_030--Hb_000792_130 Hb_008695_040 Hb_008695_040 Hb_002662_030--Hb_008695_040 Hb_005400_030 Hb_005400_030 Hb_002662_030--Hb_005400_030 Hb_000656_170 Hb_000656_170 Hb_002662_030--Hb_000656_170 Hb_000212_330 Hb_000212_330 Hb_003922_010--Hb_000212_330 Hb_003226_140 Hb_003226_140 Hb_003922_010--Hb_003226_140 Hb_000468_060 Hb_000468_060 Hb_003922_010--Hb_000468_060 Hb_002303_070 Hb_002303_070 Hb_003922_010--Hb_002303_070 Hb_001662_150 Hb_001662_150 Hb_003922_010--Hb_001662_150 Hb_004127_030 Hb_004127_030 Hb_003922_010--Hb_004127_030 Hb_003599_040 Hb_003599_040 Hb_000327_190--Hb_003599_040 Hb_000327_190--Hb_000926_250 Hb_000327_190--Hb_002284_240 Hb_002477_070 Hb_002477_070 Hb_000327_190--Hb_002477_070 Hb_033834_040 Hb_033834_040 Hb_000327_190--Hb_033834_040 Hb_008900_010 Hb_008900_010 Hb_000327_190--Hb_008900_010 Hb_001054_130 Hb_001054_130 Hb_002603_080--Hb_001054_130 Hb_002603_080--Hb_003922_010 Hb_000567_030 Hb_000567_030 Hb_002603_080--Hb_000567_030 Hb_000317_410 Hb_000317_410 Hb_002603_080--Hb_000317_410 Hb_000157_100 Hb_000157_100 Hb_002603_080--Hb_000157_100 Hb_007317_180 Hb_007317_180 Hb_002603_080--Hb_007317_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0117626 0.00581239 0.0714547 0.0215194 0.062452 0.0787633
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.106658 0.0839333 0.0401907 0.0707101 0.0224163

CAGE analysis