Hb_000086_410

Information

Type -
Description -
Location Contig86: 331053-332376
Sequence    

Annotation

kegg
ID cic:CICLE_v10021950mg
description hypothetical protein
nr
ID KDO60400.1
description hypothetical protein CISIN_1g0263261mg [Citrus sinensis]
swissprot
ID Q9SFC6
description Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana GN=GDI1 PE=1 SV=1
trembl
ID V4TU58
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021950mg PE=4 SV=1
Gene Ontology
ID GO:0005737
description rho gdp-dissociation inhibitor 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60733: 330309-330431 , PASA_asmbl_60734: 330560-332342
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000086_410 0.0 - - hypothetical protein CISIN_1g0263261mg [Citrus sinensis]
2 Hb_005170_010 0.1572116365 - - -
3 Hb_000004_010 0.1573092196 - - hypothetical protein Csa_6G120400 [Cucumis sativus]
4 Hb_003669_010 0.158912202 - - PREDICTED: psbP domain-containing protein 5, chloroplastic [Populus euphratica]
5 Hb_007477_050 0.1738283228 - - PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Jatropha curcas]
6 Hb_002079_050 0.1773423446 - - hypothetical protein B456_004G182300 [Gossypium raimondii]
7 Hb_000703_100 0.1777636308 - - PREDICTED: bifunctional riboflavin kinase/FMN phosphatase-like [Jatropha curcas]
8 Hb_150023_010 0.1808654186 - - 50S ribosomal protein L2, putative [Ricinus communis]
9 Hb_000004_020 0.1824705804 - - conserved hypothetical protein [Ricinus communis]
10 Hb_165279_010 0.184082243 - - Kiwellin, putative [Ricinus communis]
11 Hb_012340_070 0.1844398914 - - Gamma-secretase subunit APH1-like family protein [Populus trichocarpa]
12 Hb_001014_110 0.1848482201 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
13 Hb_010883_140 0.1886171054 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
14 Hb_003758_020 0.1888073015 - - UGTPg34 [Panax ginseng]
15 Hb_001104_130 0.1893581793 - - C-14 sterol reductase, putative [Ricinus communis]
16 Hb_000317_140 0.1917339133 - - hypothetical protein CISIN_1g0019781mg, partial [Citrus sinensis]
17 Hb_005527_020 0.1918967534 - - PREDICTED: uncharacterized protein LOC105643027 [Jatropha curcas]
18 Hb_099116_010 0.194251756 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002498_260 0.19467291 - - PREDICTED: putative lactoylglutathione lyase [Jatropha curcas]
20 Hb_000539_050 0.1957553323 - - bile acid:sodium symporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_000086_410 Hb_000086_410 Hb_005170_010 Hb_005170_010 Hb_000086_410--Hb_005170_010 Hb_000004_010 Hb_000004_010 Hb_000086_410--Hb_000004_010 Hb_003669_010 Hb_003669_010 Hb_000086_410--Hb_003669_010 Hb_007477_050 Hb_007477_050 Hb_000086_410--Hb_007477_050 Hb_002079_050 Hb_002079_050 Hb_000086_410--Hb_002079_050 Hb_000703_100 Hb_000703_100 Hb_000086_410--Hb_000703_100 Hb_000230_180 Hb_000230_180 Hb_005170_010--Hb_000230_180 Hb_000077_290 Hb_000077_290 Hb_005170_010--Hb_000077_290 Hb_000035_330 Hb_000035_330 Hb_005170_010--Hb_000035_330 Hb_086639_080 Hb_086639_080 Hb_005170_010--Hb_086639_080 Hb_002611_020 Hb_002611_020 Hb_005170_010--Hb_002611_020 Hb_002226_080 Hb_002226_080 Hb_005170_010--Hb_002226_080 Hb_000720_080 Hb_000720_080 Hb_000004_010--Hb_000720_080 Hb_001747_030 Hb_001747_030 Hb_000004_010--Hb_001747_030 Hb_000016_060 Hb_000016_060 Hb_000004_010--Hb_000016_060 Hb_007390_020 Hb_007390_020 Hb_000004_010--Hb_007390_020 Hb_005527_020 Hb_005527_020 Hb_000004_010--Hb_005527_020 Hb_000004_010--Hb_003669_010 Hb_045770_010 Hb_045770_010 Hb_003669_010--Hb_045770_010 Hb_003758_020 Hb_003758_020 Hb_003669_010--Hb_003758_020 Hb_008566_040 Hb_008566_040 Hb_003669_010--Hb_008566_040 Hb_002960_150 Hb_002960_150 Hb_003669_010--Hb_002960_150 Hb_003020_210 Hb_003020_210 Hb_003669_010--Hb_003020_210 Hb_000172_440 Hb_000172_440 Hb_007477_050--Hb_000172_440 Hb_000189_480 Hb_000189_480 Hb_007477_050--Hb_000189_480 Hb_001104_130 Hb_001104_130 Hb_007477_050--Hb_001104_130 Hb_003994_300 Hb_003994_300 Hb_007477_050--Hb_003994_300 Hb_002400_320 Hb_002400_320 Hb_007477_050--Hb_002400_320 Hb_009661_030 Hb_009661_030 Hb_007477_050--Hb_009661_030 Hb_142328_010 Hb_142328_010 Hb_002079_050--Hb_142328_010 Hb_002200_040 Hb_002200_040 Hb_002079_050--Hb_002200_040 Hb_002079_030 Hb_002079_030 Hb_002079_050--Hb_002079_030 Hb_150023_010 Hb_150023_010 Hb_002079_050--Hb_150023_010 Hb_006810_030 Hb_006810_030 Hb_002079_050--Hb_006810_030 Hb_026745_020 Hb_026745_020 Hb_002079_050--Hb_026745_020 Hb_000703_100--Hb_002400_320 Hb_014361_060 Hb_014361_060 Hb_000703_100--Hb_014361_060 Hb_008406_180 Hb_008406_180 Hb_000703_100--Hb_008406_180 Hb_000922_300 Hb_000922_300 Hb_000703_100--Hb_000922_300 Hb_000665_190 Hb_000665_190 Hb_000703_100--Hb_000665_190 Hb_029584_040 Hb_029584_040 Hb_000703_100--Hb_029584_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.7167 4.27968 13.6767 42.4853 12.6571 25.2599
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.2394 8.13503 1.08731 8.80562 19.4097

CAGE analysis