Hb_176486_020

Information

Type -
Description -
Location Contig176486: 19720-26646
Sequence    

Annotation

kegg
ID pop:POPTR_0003s09340g
description POPTRDRAFT_757197; hypothetical protein
nr
ID XP_011028142.1
description PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Populus euphratica]
swissprot
ID Q9LXA5
description L-type lectin-domain containing receptor kinase IX.1 OS=Arabidopsis thaliana GN=LECRK91 PE=2 SV=1
trembl
ID B9GZH8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s09340g PE=3 SV=2
Gene Ontology
ID GO:0005622
description l-type lectin-domain containing receptor kinase -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_176486_020 0.0 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Populus euphratica]
2 Hb_006816_160 0.242928747 - - hypothetical protein RCOM_1434920 [Ricinus communis]
3 Hb_138743_010 0.2527249692 - - hypothetical protein JCGZ_23770 [Jatropha curcas]
4 Hb_001295_050 0.2555229462 - - PREDICTED: uncharacterized protein LOC101503108 isoform X1 [Cicer arietinum]
5 Hb_000007_470 0.2583017464 - - PREDICTED: phosphate transporter PHO1 homolog 1 [Jatropha curcas]
6 Hb_007304_100 0.2610816162 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Jatropha curcas]
7 Hb_000369_050 0.2636563545 - - Ankyrin repeat family protein, putative [Theobroma cacao]
8 Hb_003209_040 0.2674312909 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 22-like [Gossypium raimondii]
9 Hb_001481_110 0.268465126 - - S-adenosylmethionine synthetase 1 family protein [Populus trichocarpa]
10 Hb_007885_120 0.2686019534 - - PREDICTED: BON1-associated protein 2-like [Jatropha curcas]
11 Hb_111985_090 0.2690617312 - - hypothetical protein RCOM_1595950 [Ricinus communis]
12 Hb_003031_070 0.2695152883 - - PREDICTED: cysteine-rich repeat secretory protein 55-like [Jatropha curcas]
13 Hb_003145_030 0.2711666012 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003906_150 0.2722351068 - - peptidoglycan-binding LysM domain-containing family protein, partial [Populus trichocarpa]
15 Hb_000983_110 0.2741933201 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
16 Hb_009787_020 0.2748504635 - - PREDICTED: cytochrome P450 705A5-like [Jatropha curcas]
17 Hb_005687_060 0.2751449359 - - PREDICTED: cinnamoyl-CoA reductase 1-like isoform X1 [Jatropha curcas]
18 Hb_001221_520 0.2757298465 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002116_020 0.2779246155 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 35 [Jatropha curcas]
20 Hb_005054_010 0.278082793 - - amino acid transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_176486_020 Hb_176486_020 Hb_006816_160 Hb_006816_160 Hb_176486_020--Hb_006816_160 Hb_138743_010 Hb_138743_010 Hb_176486_020--Hb_138743_010 Hb_001295_050 Hb_001295_050 Hb_176486_020--Hb_001295_050 Hb_000007_470 Hb_000007_470 Hb_176486_020--Hb_000007_470 Hb_007304_100 Hb_007304_100 Hb_176486_020--Hb_007304_100 Hb_000369_050 Hb_000369_050 Hb_176486_020--Hb_000369_050 Hb_009252_120 Hb_009252_120 Hb_006816_160--Hb_009252_120 Hb_002820_120 Hb_002820_120 Hb_006816_160--Hb_002820_120 Hb_162047_010 Hb_162047_010 Hb_006816_160--Hb_162047_010 Hb_004767_010 Hb_004767_010 Hb_006816_160--Hb_004767_010 Hb_161954_010 Hb_161954_010 Hb_006816_160--Hb_161954_010 Hb_000445_010 Hb_000445_010 Hb_006816_160--Hb_000445_010 Hb_138743_010--Hb_000007_470 Hb_003906_150 Hb_003906_150 Hb_138743_010--Hb_003906_150 Hb_168031_010 Hb_168031_010 Hb_138743_010--Hb_168031_010 Hb_002116_020 Hb_002116_020 Hb_138743_010--Hb_002116_020 Hb_006590_040 Hb_006590_040 Hb_138743_010--Hb_006590_040 Hb_111985_090 Hb_111985_090 Hb_138743_010--Hb_111985_090 Hb_005048_090 Hb_005048_090 Hb_001295_050--Hb_005048_090 Hb_020301_010 Hb_020301_010 Hb_001295_050--Hb_020301_010 Hb_003145_030 Hb_003145_030 Hb_001295_050--Hb_003145_030 Hb_000984_110 Hb_000984_110 Hb_001295_050--Hb_000984_110 Hb_010267_030 Hb_010267_030 Hb_001295_050--Hb_010267_030 Hb_000172_070 Hb_000172_070 Hb_001295_050--Hb_000172_070 Hb_000007_020 Hb_000007_020 Hb_000007_470--Hb_000007_020 Hb_000201_050 Hb_000201_050 Hb_000007_470--Hb_000201_050 Hb_000227_350 Hb_000227_350 Hb_000007_470--Hb_000227_350 Hb_021443_010 Hb_021443_010 Hb_000007_470--Hb_021443_010 Hb_003711_050 Hb_003711_050 Hb_000007_470--Hb_003711_050 Hb_000007_470--Hb_111985_090 Hb_005687_060 Hb_005687_060 Hb_007304_100--Hb_005687_060 Hb_001481_110 Hb_001481_110 Hb_007304_100--Hb_001481_110 Hb_000805_330 Hb_000805_330 Hb_007304_100--Hb_000805_330 Hb_008725_190 Hb_008725_190 Hb_007304_100--Hb_008725_190 Hb_007304_100--Hb_003906_150 Hb_055993_010 Hb_055993_010 Hb_007304_100--Hb_055993_010 Hb_000369_050--Hb_005687_060 Hb_000369_050--Hb_001481_110 Hb_103149_010 Hb_103149_010 Hb_000369_050--Hb_103149_010 Hb_001610_050 Hb_001610_050 Hb_000369_050--Hb_001610_050 Hb_000702_040 Hb_000702_040 Hb_000369_050--Hb_000702_040 Hb_005892_010 Hb_005892_010 Hb_000369_050--Hb_005892_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.121816 0 0.147404 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0159695 0.0125665 0 0 0.0267653

CAGE analysis