Hb_170098_010

Information

Type -
Description -
Location Contig170098: 223-2173
Sequence    

Annotation

kegg
ID rcu:RCOM_2117770
description hypothetical protein
nr
ID XP_012066561.1
description PREDICTED: cullin-1 [Jatropha curcas]
swissprot
ID Q94AH6
description Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1
trembl
ID A0A067LEP4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24333 PE=3 SV=1
Gene Ontology
ID GO:0031461
description cullin-1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15909: 1998-2329
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_170098_010 0.0 - - PREDICTED: cullin-1 [Jatropha curcas]
2 Hb_003086_040 0.1161174684 - - PREDICTED: uncharacterized protein LOC105635780 isoform X2 [Jatropha curcas]
3 Hb_003687_120 0.1209230556 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
4 Hb_178968_060 0.1239110526 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
5 Hb_011716_010 0.1243296576 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
6 Hb_000116_560 0.1248620007 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
7 Hb_026198_010 0.1274678805 - - PREDICTED: uncharacterized protein LOC105634369 isoform X1 [Jatropha curcas]
8 Hb_001824_030 0.1306717916 - - plant sec1, putative [Ricinus communis]
9 Hb_003428_090 0.1312137878 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
10 Hb_005245_120 0.1313790565 - - XPA-binding protein, putative [Ricinus communis]
11 Hb_000926_260 0.1350046714 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001221_440 0.1372302136 - - PREDICTED: SUMO-activating enzyme subunit 1B-1 isoform X1 [Jatropha curcas]
13 Hb_002693_030 0.1375605276 - - PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]
14 Hb_177994_010 0.1390643028 - - PREDICTED: cullin-1 [Jatropha curcas]
15 Hb_001221_580 0.1402337017 - - PREDICTED: recQ-mediated genome instability protein 1 [Jatropha curcas]
16 Hb_003498_100 0.1407393944 - - component of oligomeric golgi complex, putative [Ricinus communis]
17 Hb_000753_160 0.1408401173 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
18 Hb_081599_010 0.1409094873 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002304_050 0.1411263348 - - pyruvate kinase, putative [Ricinus communis]
20 Hb_008725_050 0.1419340065 - - syntaxin, putative [Ricinus communis]

Gene co-expression network

sample Hb_170098_010 Hb_170098_010 Hb_003086_040 Hb_003086_040 Hb_170098_010--Hb_003086_040 Hb_003687_120 Hb_003687_120 Hb_170098_010--Hb_003687_120 Hb_178968_060 Hb_178968_060 Hb_170098_010--Hb_178968_060 Hb_011716_010 Hb_011716_010 Hb_170098_010--Hb_011716_010 Hb_000116_560 Hb_000116_560 Hb_170098_010--Hb_000116_560 Hb_026198_010 Hb_026198_010 Hb_170098_010--Hb_026198_010 Hb_000753_160 Hb_000753_160 Hb_003086_040--Hb_000753_160 Hb_001824_030 Hb_001824_030 Hb_003086_040--Hb_001824_030 Hb_002740_080 Hb_002740_080 Hb_003086_040--Hb_002740_080 Hb_002045_170 Hb_002045_170 Hb_003086_040--Hb_002045_170 Hb_004724_390 Hb_004724_390 Hb_003086_040--Hb_004724_390 Hb_003470_040 Hb_003470_040 Hb_003687_120--Hb_003470_040 Hb_008725_050 Hb_008725_050 Hb_003687_120--Hb_008725_050 Hb_003428_090 Hb_003428_090 Hb_003687_120--Hb_003428_090 Hb_000723_030 Hb_000723_030 Hb_003687_120--Hb_000723_030 Hb_000890_160 Hb_000890_160 Hb_003687_120--Hb_000890_160 Hb_003687_120--Hb_178968_060 Hb_001635_110 Hb_001635_110 Hb_178968_060--Hb_001635_110 Hb_000230_460 Hb_000230_460 Hb_178968_060--Hb_000230_460 Hb_001300_280 Hb_001300_280 Hb_178968_060--Hb_001300_280 Hb_003498_100 Hb_003498_100 Hb_178968_060--Hb_003498_100 Hb_000120_890 Hb_000120_890 Hb_178968_060--Hb_000120_890 Hb_001221_440 Hb_001221_440 Hb_178968_060--Hb_001221_440 Hb_001279_190 Hb_001279_190 Hb_011716_010--Hb_001279_190 Hb_002687_180 Hb_002687_180 Hb_011716_010--Hb_002687_180 Hb_007483_070 Hb_007483_070 Hb_011716_010--Hb_007483_070 Hb_001504_010 Hb_001504_010 Hb_011716_010--Hb_001504_010 Hb_006438_020 Hb_006438_020 Hb_011716_010--Hb_006438_020 Hb_004228_120 Hb_004228_120 Hb_011716_010--Hb_004228_120 Hb_018845_010 Hb_018845_010 Hb_000116_560--Hb_018845_010 Hb_177994_010 Hb_177994_010 Hb_000116_560--Hb_177994_010 Hb_011671_120 Hb_011671_120 Hb_000116_560--Hb_011671_120 Hb_000375_300 Hb_000375_300 Hb_000116_560--Hb_000375_300 Hb_081599_010 Hb_081599_010 Hb_000116_560--Hb_081599_010 Hb_000913_040 Hb_000913_040 Hb_000116_560--Hb_000913_040 Hb_000120_810 Hb_000120_810 Hb_026198_010--Hb_000120_810 Hb_000926_260 Hb_000926_260 Hb_026198_010--Hb_000926_260 Hb_026198_010--Hb_003687_120 Hb_006637_030 Hb_006637_030 Hb_026198_010--Hb_006637_030 Hb_002693_030 Hb_002693_030 Hb_026198_010--Hb_002693_030 Hb_001140_090 Hb_001140_090 Hb_026198_010--Hb_001140_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.9432 38.955 64.1745 46.8381 12.5371 13.4387
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.08049 41.3678 7.93449 36.1172 27.4766

CAGE analysis