Hb_003086_040

Information

Type -
Description -
Location Contig3086: 34777-40270
Sequence    

Annotation

kegg
ID rcu:RCOM_0422090
description hypothetical protein
nr
ID XP_012074269.1
description PREDICTED: uncharacterized protein LOC105635780 isoform X2 [Jatropha curcas]
swissprot
ID Q84ZT9
description Protein WAVE-DAMPENED 2 OS=Arabidopsis thaliana GN=WVD2 PE=2 SV=1
trembl
ID A0A067KW54
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08723 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32571: 34807-37657
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003086_040 0.0 - - PREDICTED: uncharacterized protein LOC105635780 isoform X2 [Jatropha curcas]
2 Hb_170098_010 0.1161174684 - - PREDICTED: cullin-1 [Jatropha curcas]
3 Hb_000753_160 0.1219883801 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
4 Hb_001824_030 0.1226429061 - - plant sec1, putative [Ricinus communis]
5 Hb_002740_080 0.1264163701 - - flap endonuclease-1, putative [Ricinus communis]
6 Hb_002045_170 0.1268110834 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]
7 Hb_004724_390 0.1277629644 - - PREDICTED: nicalin-1-like [Populus euphratica]
8 Hb_000800_020 0.1293988218 - - PREDICTED: 3-phosphoinositide-dependent protein kinase 2 [Jatropha curcas]
9 Hb_003449_100 0.1301467871 - - PREDICTED: protein YIPF6 homolog [Jatropha curcas]
10 Hb_000001_090 0.1315753416 - - PREDICTED: uncharacterized protein At3g58460 [Populus euphratica]
11 Hb_000327_330 0.1327227197 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004531_150 0.1340368167 - - PREDICTED: peroxisome biogenesis protein 2 isoform X1 [Jatropha curcas]
13 Hb_006261_050 0.1341646407 transcription factor TF Family: C2C2-YABBY DNA-binding protein MNB1B, putative [Ricinus communis]
14 Hb_029584_120 0.1358531683 - - PREDICTED: K(+) efflux antiporter 4 isoform X1 [Jatropha curcas]
15 Hb_000866_070 0.1373152503 - - PREDICTED: LOW QUALITY PROTEIN: SKP1-like protein 21 [Jatropha curcas]
16 Hb_011716_010 0.1396528513 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
17 Hb_002304_050 0.1398689558 - - pyruvate kinase, putative [Ricinus communis]
18 Hb_002900_150 0.1413118266 - - PREDICTED: syntaxin-81 [Jatropha curcas]
19 Hb_000116_560 0.1419580526 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
20 Hb_004567_010 0.1429221095 - - PREDICTED: ER lumen protein-retaining receptor [Jatropha curcas]

Gene co-expression network

sample Hb_003086_040 Hb_003086_040 Hb_170098_010 Hb_170098_010 Hb_003086_040--Hb_170098_010 Hb_000753_160 Hb_000753_160 Hb_003086_040--Hb_000753_160 Hb_001824_030 Hb_001824_030 Hb_003086_040--Hb_001824_030 Hb_002740_080 Hb_002740_080 Hb_003086_040--Hb_002740_080 Hb_002045_170 Hb_002045_170 Hb_003086_040--Hb_002045_170 Hb_004724_390 Hb_004724_390 Hb_003086_040--Hb_004724_390 Hb_003687_120 Hb_003687_120 Hb_170098_010--Hb_003687_120 Hb_178968_060 Hb_178968_060 Hb_170098_010--Hb_178968_060 Hb_011716_010 Hb_011716_010 Hb_170098_010--Hb_011716_010 Hb_000116_560 Hb_000116_560 Hb_170098_010--Hb_000116_560 Hb_026198_010 Hb_026198_010 Hb_170098_010--Hb_026198_010 Hb_002304_050 Hb_002304_050 Hb_000753_160--Hb_002304_050 Hb_001250_050 Hb_001250_050 Hb_000753_160--Hb_001250_050 Hb_007919_110 Hb_007919_110 Hb_000753_160--Hb_007919_110 Hb_003449_100 Hb_003449_100 Hb_000753_160--Hb_003449_100 Hb_002687_180 Hb_002687_180 Hb_000753_160--Hb_002687_180 Hb_001279_190 Hb_001279_190 Hb_000753_160--Hb_001279_190 Hb_000940_050 Hb_000940_050 Hb_001824_030--Hb_000940_050 Hb_016448_010 Hb_016448_010 Hb_001824_030--Hb_016448_010 Hb_003506_030 Hb_003506_030 Hb_001824_030--Hb_003506_030 Hb_001824_030--Hb_002045_170 Hb_001824_030--Hb_011716_010 Hb_001824_030--Hb_003449_100 Hb_081599_010 Hb_081599_010 Hb_002740_080--Hb_081599_010 Hb_002740_080--Hb_001279_190 Hb_000160_070 Hb_000160_070 Hb_002740_080--Hb_000160_070 Hb_000072_300 Hb_000072_300 Hb_002740_080--Hb_000072_300 Hb_000815_300 Hb_000815_300 Hb_002740_080--Hb_000815_300 Hb_001227_120 Hb_001227_120 Hb_002740_080--Hb_001227_120 Hb_002045_170--Hb_004724_390 Hb_000954_010 Hb_000954_010 Hb_002045_170--Hb_000954_010 Hb_002045_170--Hb_001250_050 Hb_002045_170--Hb_002687_180 Hb_001246_130 Hb_001246_130 Hb_002045_170--Hb_001246_130 Hb_000317_110 Hb_000317_110 Hb_002045_170--Hb_000317_110 Hb_004724_390--Hb_002687_180 Hb_000497_190 Hb_000497_190 Hb_004724_390--Hb_000497_190 Hb_004724_390--Hb_000317_110 Hb_004228_120 Hb_004228_120 Hb_004724_390--Hb_004228_120 Hb_012760_030 Hb_012760_030 Hb_004724_390--Hb_012760_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.80223 16.2656 30.17 30.4978 10.5137 6.46761
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.50208 15.0493 2.78831 11.9683 18.5413

CAGE analysis