Hb_111889_010

Information

Type -
Description -
Location Contig111889: 383-2960
Sequence    

Annotation

kegg
ID brp:103845154
description DNA ligase 4
nr
ID XP_012068473.1
description PREDICTED: DNA ligase 4 [Jatropha curcas]
swissprot
ID Q9LL84
description DNA ligase 4 OS=Arabidopsis thaliana GN=LIG4 PE=1 SV=1
trembl
ID A0A0D3EC18
description Uncharacterized protein OS=Brassica oleracea var. oleracea GN=ATLIG4 PE=4 SV=1
Gene Ontology
ID GO:0000166
description dna ligase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_111889_010 0.0 - - PREDICTED: DNA ligase 4 [Jatropha curcas]
2 Hb_023226_080 0.0892562741 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
3 Hb_000012_260 0.0954635451 - - Far upstream element-binding 2 [Gossypium arboreum]
4 Hb_001628_070 0.1006842942 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
5 Hb_000402_190 0.105968188 - - PREDICTED: F-box protein At1g70590 [Jatropha curcas]
6 Hb_005542_140 0.1066157687 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
7 Hb_002005_090 0.1076796068 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005048_100 0.1088844402 - - secretory carrier membrane protein, putative [Ricinus communis]
9 Hb_000313_120 0.1099076389 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]
10 Hb_000024_040 0.111863943 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]
11 Hb_001019_180 0.1122451135 - - PREDICTED: uncharacterized protein LOC105639324 [Jatropha curcas]
12 Hb_002217_170 0.1132360034 - - PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform X1 [Gossypium raimondii]
13 Hb_000412_010 0.1132516314 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
14 Hb_006531_020 0.1132746562 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
15 Hb_004586_290 0.1132857272 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
16 Hb_178051_070 0.1141641093 - - PREDICTED: exocyst complex component EXO70B1-like [Jatropha curcas]
17 Hb_145022_010 0.1144673388 - - hypothetical protein JCGZ_22699 [Jatropha curcas]
18 Hb_003835_070 0.1145014292 - - PREDICTED: uncharacterized protein LOC105641698 isoform X2 [Jatropha curcas]
19 Hb_000107_660 0.1149815702 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
20 Hb_002005_080 0.1152524747 - - PREDICTED: uncharacterized protein LOC105649750 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_111889_010 Hb_111889_010 Hb_023226_080 Hb_023226_080 Hb_111889_010--Hb_023226_080 Hb_000012_260 Hb_000012_260 Hb_111889_010--Hb_000012_260 Hb_001628_070 Hb_001628_070 Hb_111889_010--Hb_001628_070 Hb_000402_190 Hb_000402_190 Hb_111889_010--Hb_000402_190 Hb_005542_140 Hb_005542_140 Hb_111889_010--Hb_005542_140 Hb_002005_090 Hb_002005_090 Hb_111889_010--Hb_002005_090 Hb_023226_080--Hb_005542_140 Hb_000176_100 Hb_000176_100 Hb_023226_080--Hb_000176_100 Hb_000069_410 Hb_000069_410 Hb_023226_080--Hb_000069_410 Hb_159558_010 Hb_159558_010 Hb_023226_080--Hb_159558_010 Hb_023226_080--Hb_000012_260 Hb_009615_170 Hb_009615_170 Hb_023226_080--Hb_009615_170 Hb_003835_070 Hb_003835_070 Hb_000012_260--Hb_003835_070 Hb_000656_380 Hb_000656_380 Hb_000012_260--Hb_000656_380 Hb_000614_210 Hb_000614_210 Hb_000012_260--Hb_000614_210 Hb_003058_060 Hb_003058_060 Hb_000012_260--Hb_003058_060 Hb_000107_660 Hb_000107_660 Hb_000012_260--Hb_000107_660 Hb_004705_020 Hb_004705_020 Hb_001628_070--Hb_004705_020 Hb_006531_020 Hb_006531_020 Hb_001628_070--Hb_006531_020 Hb_004586_290 Hb_004586_290 Hb_001628_070--Hb_004586_290 Hb_000003_100 Hb_000003_100 Hb_001628_070--Hb_000003_100 Hb_000024_040 Hb_000024_040 Hb_001628_070--Hb_000024_040 Hb_000412_010 Hb_000412_010 Hb_001628_070--Hb_000412_010 Hb_007904_130 Hb_007904_130 Hb_000402_190--Hb_007904_130 Hb_002391_210 Hb_002391_210 Hb_000402_190--Hb_002391_210 Hb_003544_060 Hb_003544_060 Hb_000402_190--Hb_003544_060 Hb_002344_060 Hb_002344_060 Hb_000402_190--Hb_002344_060 Hb_000402_190--Hb_000107_660 Hb_010222_070 Hb_010222_070 Hb_000402_190--Hb_010222_070 Hb_005542_140--Hb_159558_010 Hb_007426_060 Hb_007426_060 Hb_005542_140--Hb_007426_060 Hb_000862_040 Hb_000862_040 Hb_005542_140--Hb_000862_040 Hb_005568_040 Hb_005568_040 Hb_005542_140--Hb_005568_040 Hb_001668_010 Hb_001668_010 Hb_005542_140--Hb_001668_010 Hb_005048_100 Hb_005048_100 Hb_002005_090--Hb_005048_100 Hb_003849_240 Hb_003849_240 Hb_002005_090--Hb_003849_240 Hb_000823_030 Hb_000823_030 Hb_002005_090--Hb_000823_030 Hb_002005_090--Hb_000069_410 Hb_002005_090--Hb_003058_060 Hb_001575_010 Hb_001575_010 Hb_002005_090--Hb_001575_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.638538 2.67722 1.1845 1.01765 1.704 1.0954
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.992562 0.780185 1.50451 2.54877 1.11084

CAGE analysis