Hb_068804_020

Information

Type -
Description -
Location Contig68804: 7780-8477
Sequence    

Annotation

kegg
ID atr:s00046p00231970
description AMTR_s00046p00231970; hypothetical protein
nr
ID ERN18100.1
description hypothetical protein AMTR_s00046p00231970 [Amborella trichopoda]
swissprot
ID -
description -
trembl
ID U5D7A4
description Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00046p00231970 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54117: 7753-8572
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_068804_020 0.0 - - hypothetical protein AMTR_s00046p00231970 [Amborella trichopoda]
2 Hb_150360_020 0.2083268204 - - PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]
3 Hb_000093_150 0.2120216654 - - 6-phosphogluconolactonase, putative [Ricinus communis]
4 Hb_000599_100 0.2157389949 - - hypothetical protein B456_001G254000 [Gossypium raimondii]
5 Hb_001828_020 0.2198301303 - - hypothetical protein CISIN_1g010132mg [Citrus sinensis]
6 Hb_001780_150 0.221681644 - - ceramidase, putative [Ricinus communis]
7 Hb_003253_050 0.2289905443 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 3 [Jatropha curcas]
8 Hb_112023_010 0.2355149758 - - hypothetical protein EUGRSUZ_C03826 [Eucalyptus grandis]
9 Hb_010334_020 0.2362009124 - - PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 1-like [Sesamum indicum]
10 Hb_008790_020 0.2395919407 - - PREDICTED: uncharacterized protein LOC105638122 [Jatropha curcas]
11 Hb_000120_390 0.2411669486 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
12 Hb_000209_110 0.2427981218 - - PREDICTED: receptor-like protein kinase BRI1-like 3 [Jatropha curcas]
13 Hb_001524_090 0.2439546133 - - PREDICTED: uncharacterized protein LOC105113929 [Populus euphratica]
14 Hb_000692_160 0.2452740872 - - Transportin 1 isoform 1 [Theobroma cacao]
15 Hb_011716_090 0.2495288727 transcription factor TF Family: HRT putative transciption factor family protein [Populus trichocarpa]
16 Hb_003226_120 0.2500266621 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003906_170 0.2508456469 - - alcohol dehydrogenase, putative [Ricinus communis]
18 Hb_033501_010 0.2509037974 - - hypothetical protein JCGZ_21381 [Jatropha curcas]
19 Hb_002827_020 0.2521504879 - - PREDICTED: plant intracellular Ras-group-related LRR protein 5-like [Jatropha curcas]
20 Hb_000155_110 0.254603019 - - Auxin response factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_068804_020 Hb_068804_020 Hb_150360_020 Hb_150360_020 Hb_068804_020--Hb_150360_020 Hb_000093_150 Hb_000093_150 Hb_068804_020--Hb_000093_150 Hb_000599_100 Hb_000599_100 Hb_068804_020--Hb_000599_100 Hb_001828_020 Hb_001828_020 Hb_068804_020--Hb_001828_020 Hb_001780_150 Hb_001780_150 Hb_068804_020--Hb_001780_150 Hb_003253_050 Hb_003253_050 Hb_068804_020--Hb_003253_050 Hb_003226_120 Hb_003226_120 Hb_150360_020--Hb_003226_120 Hb_150360_020--Hb_000599_100 Hb_150360_020--Hb_003253_050 Hb_084481_010 Hb_084481_010 Hb_150360_020--Hb_084481_010 Hb_033501_010 Hb_033501_010 Hb_150360_020--Hb_033501_010 Hb_005873_010 Hb_005873_010 Hb_150360_020--Hb_005873_010 Hb_000928_040 Hb_000928_040 Hb_000093_150--Hb_000928_040 Hb_127886_010 Hb_127886_010 Hb_000093_150--Hb_127886_010 Hb_000645_210 Hb_000645_210 Hb_000093_150--Hb_000645_210 Hb_004462_010 Hb_004462_010 Hb_000093_150--Hb_004462_010 Hb_003517_020 Hb_003517_020 Hb_000093_150--Hb_003517_020 Hb_002304_140 Hb_002304_140 Hb_000093_150--Hb_002304_140 Hb_000599_100--Hb_003253_050 Hb_000599_100--Hb_033501_010 Hb_062007_010 Hb_062007_010 Hb_000599_100--Hb_062007_010 Hb_000721_040 Hb_000721_040 Hb_000599_100--Hb_000721_040 Hb_000001_190 Hb_000001_190 Hb_000599_100--Hb_000001_190 Hb_001089_040 Hb_001089_040 Hb_000599_100--Hb_001089_040 Hb_000395_220 Hb_000395_220 Hb_001828_020--Hb_000395_220 Hb_083799_010 Hb_083799_010 Hb_001828_020--Hb_083799_010 Hb_002272_170 Hb_002272_170 Hb_001828_020--Hb_002272_170 Hb_001726_110 Hb_001726_110 Hb_001828_020--Hb_001726_110 Hb_008790_020 Hb_008790_020 Hb_001828_020--Hb_008790_020 Hb_007426_140 Hb_007426_140 Hb_001828_020--Hb_007426_140 Hb_001780_150--Hb_000395_220 Hb_011287_010 Hb_011287_010 Hb_001780_150--Hb_011287_010 Hb_075315_010 Hb_075315_010 Hb_001780_150--Hb_075315_010 Hb_001780_150--Hb_007426_140 Hb_002851_010 Hb_002851_010 Hb_001780_150--Hb_002851_010 Hb_000227_040 Hb_000227_040 Hb_001780_150--Hb_000227_040 Hb_119494_010 Hb_119494_010 Hb_003253_050--Hb_119494_010 Hb_002400_410 Hb_002400_410 Hb_003253_050--Hb_002400_410 Hb_002391_210 Hb_002391_210 Hb_003253_050--Hb_002391_210 Hb_003253_050--Hb_033501_010 Hb_119530_010 Hb_119530_010 Hb_003253_050--Hb_119530_010 Hb_002889_030 Hb_002889_030 Hb_003253_050--Hb_002889_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.72492 17.8745 0.633219 17.606 7.24851 21.1855
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.5938 3.64641 2.41783 54.1193 5.2563

CAGE analysis