Hb_062007_010

Information

Type -
Description -
Location Contig62007: 307-1309
Sequence    

Annotation

kegg
ID rcu:RCOM_1039580
description argininosuccinate lyase, putative (EC:4.3.2.1)
nr
ID XP_012068017.1
description PREDICTED: argininosuccinate lyase, chloroplastic [Jatropha curcas]
swissprot
ID Q9LEU8
description Argininosuccinate lyase, chloroplastic OS=Arabidopsis thaliana GN=At5g10920 PE=2 SV=1
trembl
ID A0A067L2L3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15890 PE=3 SV=1
Gene Ontology
ID GO:0016829
description argininosuccinate chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_062007_010 0.0 - - PREDICTED: argininosuccinate lyase, chloroplastic [Jatropha curcas]
2 Hb_000521_270 0.111563399 - - PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]
3 Hb_002667_060 0.117433181 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
4 Hb_002391_210 0.1176209399 - - PREDICTED: putative F-box protein At1g65770 [Jatropha curcas]
5 Hb_003253_050 0.1267608142 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 3 [Jatropha curcas]
6 Hb_146109_010 0.1282199225 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004143_040 0.1293970702 - - argininosuccinate lyase, putative [Ricinus communis]
8 Hb_032278_030 0.132384655 - - protein phosphatase 2c, putative [Ricinus communis]
9 Hb_015175_050 0.1337039949 - - PREDICTED: AT-hook motif nuclear-localized protein 10 isoform X3 [Jatropha curcas]
10 Hb_022400_010 0.1351692173 - - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein [Theobroma cacao]
11 Hb_000421_210 0.1355396316 - - conserved hypothetical protein [Ricinus communis]
12 Hb_006788_020 0.1355649071 - - hypothetical protein JCGZ_21864 [Jatropha curcas]
13 Hb_000023_280 0.1393183997 - - hypothetical protein POPTR_0006s28210g [Populus trichocarpa]
14 Hb_000116_410 0.1401449265 - - hypothetical protein JCGZ_22416 [Jatropha curcas]
15 Hb_119530_010 0.1402165554 - - -
16 Hb_172632_110 0.1404733972 - - PREDICTED: pumilio homolog 5 [Jatropha curcas]
17 Hb_001761_130 0.1421497476 - - PREDICTED: uncharacterized protein LOC105646118 isoform X1 [Jatropha curcas]
18 Hb_001268_110 0.1426186698 - - PREDICTED: uncharacterized protein LOC105630183 isoform X2 [Jatropha curcas]
19 Hb_010142_030 0.143835223 - - PREDICTED: isoamylase 3, chloroplastic isoform X2 [Jatropha curcas]
20 Hb_004837_130 0.1445097038 - - PREDICTED: armadillo repeat-containing protein 8 [Jatropha curcas]

Gene co-expression network

sample Hb_062007_010 Hb_062007_010 Hb_000521_270 Hb_000521_270 Hb_062007_010--Hb_000521_270 Hb_002667_060 Hb_002667_060 Hb_062007_010--Hb_002667_060 Hb_002391_210 Hb_002391_210 Hb_062007_010--Hb_002391_210 Hb_003253_050 Hb_003253_050 Hb_062007_010--Hb_003253_050 Hb_146109_010 Hb_146109_010 Hb_062007_010--Hb_146109_010 Hb_004143_040 Hb_004143_040 Hb_062007_010--Hb_004143_040 Hb_005731_120 Hb_005731_120 Hb_000521_270--Hb_005731_120 Hb_000236_310 Hb_000236_310 Hb_000521_270--Hb_000236_310 Hb_000038_080 Hb_000038_080 Hb_000521_270--Hb_000038_080 Hb_000521_270--Hb_146109_010 Hb_099878_030 Hb_099878_030 Hb_000521_270--Hb_099878_030 Hb_010142_030 Hb_010142_030 Hb_002667_060--Hb_010142_030 Hb_000862_030 Hb_000862_030 Hb_002667_060--Hb_000862_030 Hb_001314_010 Hb_001314_010 Hb_002667_060--Hb_001314_010 Hb_001492_020 Hb_001492_020 Hb_002667_060--Hb_001492_020 Hb_003693_070 Hb_003693_070 Hb_002667_060--Hb_003693_070 Hb_000421_210 Hb_000421_210 Hb_002667_060--Hb_000421_210 Hb_172632_110 Hb_172632_110 Hb_002391_210--Hb_172632_110 Hb_002400_410 Hb_002400_410 Hb_002391_210--Hb_002400_410 Hb_001761_130 Hb_001761_130 Hb_002391_210--Hb_001761_130 Hb_007747_080 Hb_007747_080 Hb_002391_210--Hb_007747_080 Hb_001021_080 Hb_001021_080 Hb_002391_210--Hb_001021_080 Hb_005081_020 Hb_005081_020 Hb_002391_210--Hb_005081_020 Hb_119494_010 Hb_119494_010 Hb_003253_050--Hb_119494_010 Hb_003253_050--Hb_002400_410 Hb_003253_050--Hb_002391_210 Hb_033501_010 Hb_033501_010 Hb_003253_050--Hb_033501_010 Hb_119530_010 Hb_119530_010 Hb_003253_050--Hb_119530_010 Hb_002889_030 Hb_002889_030 Hb_003253_050--Hb_002889_030 Hb_022400_010 Hb_022400_010 Hb_146109_010--Hb_022400_010 Hb_004602_040 Hb_004602_040 Hb_146109_010--Hb_004602_040 Hb_013399_070 Hb_013399_070 Hb_146109_010--Hb_013399_070 Hb_031284_040 Hb_031284_040 Hb_146109_010--Hb_031284_040 Hb_004117_310 Hb_004117_310 Hb_146109_010--Hb_004117_310 Hb_146109_010--Hb_000236_310 Hb_000023_280 Hb_000023_280 Hb_004143_040--Hb_000023_280 Hb_000116_410 Hb_000116_410 Hb_004143_040--Hb_000116_410 Hb_003373_030 Hb_003373_030 Hb_004143_040--Hb_003373_030 Hb_002662_020 Hb_002662_020 Hb_004143_040--Hb_002662_020 Hb_003761_010 Hb_003761_010 Hb_004143_040--Hb_003761_010 Hb_001205_240 Hb_001205_240 Hb_004143_040--Hb_001205_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.8316 29.1131 7.37053 21.4225 9.41093 45.108
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.1783 18.0421 25.6358 47.4281 12.508

CAGE analysis