Hb_001828_020

Information

Type -
Description -
Location Contig1828: 12708-32416
Sequence    

Annotation

kegg
ID cic:CICLE_v10015153mg
description hypothetical protein
nr
ID KDO42043.1
description hypothetical protein CISIN_1g010132mg [Citrus sinensis]
swissprot
ID P37830
description Glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform OS=Solanum tuberosum GN=G6PDH PE=2 SV=1
trembl
ID A0A067DGN9
description Glucose-6-phosphate 1-dehydrogenase OS=Citrus sinensis GN=CISIN_1g010132mg PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17803: 12867-18855
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001828_020 0.0 - - hypothetical protein CISIN_1g010132mg [Citrus sinensis]
2 Hb_000395_220 0.1208337647 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
3 Hb_083799_010 0.1316135886 - - ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_002272_170 0.133404833 - - PREDICTED: branched-chain-amino-acid aminotransferase-like protein 1 [Jatropha curcas]
5 Hb_001726_110 0.1376922605 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 19 [Jatropha curcas]
6 Hb_008790_020 0.1425362785 - - PREDICTED: uncharacterized protein LOC105638122 [Jatropha curcas]
7 Hb_007426_140 0.1439524173 - - ornithine aminotransferase, putative [Ricinus communis]
8 Hb_001799_190 0.1463014762 - - PREDICTED: uncharacterized protein LOC105643221 [Jatropha curcas]
9 Hb_005489_140 0.1476153128 - - PREDICTED: maspardin [Jatropha curcas]
10 Hb_000302_200 0.1483313699 - - ornithine cyclodeaminase, putative [Ricinus communis]
11 Hb_003544_070 0.150175324 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000792_040 0.1503068299 - - PREDICTED: steroid 5-alpha-reductase DET2 [Jatropha curcas]
13 Hb_003849_240 0.1529671462 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
14 Hb_006717_070 0.153084024 transcription factor TF Family: MYB-related PREDICTED: transcription factor CPC-like [Jatropha curcas]
15 Hb_020805_170 0.1554558493 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
16 Hb_000009_330 0.1562495949 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
17 Hb_000251_040 0.156428158 - - PREDICTED: DNA polymerase alpha catalytic subunit isoform X1 [Jatropha curcas]
18 Hb_002217_220 0.1574936851 - - hypothetical protein POPTR_0010s15930g [Populus trichocarpa]
19 Hb_004994_090 0.1589233955 - - PREDICTED: uncharacterized protein LOC105643033 isoform X2 [Jatropha curcas]
20 Hb_001780_150 0.1599578256 - - ceramidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001828_020 Hb_001828_020 Hb_000395_220 Hb_000395_220 Hb_001828_020--Hb_000395_220 Hb_083799_010 Hb_083799_010 Hb_001828_020--Hb_083799_010 Hb_002272_170 Hb_002272_170 Hb_001828_020--Hb_002272_170 Hb_001726_110 Hb_001726_110 Hb_001828_020--Hb_001726_110 Hb_008790_020 Hb_008790_020 Hb_001828_020--Hb_008790_020 Hb_007426_140 Hb_007426_140 Hb_001828_020--Hb_007426_140 Hb_000395_220--Hb_007426_140 Hb_000395_220--Hb_083799_010 Hb_009732_020 Hb_009732_020 Hb_000395_220--Hb_009732_020 Hb_001780_150 Hb_001780_150 Hb_000395_220--Hb_001780_150 Hb_000395_220--Hb_002272_170 Hb_011287_010 Hb_011287_010 Hb_000395_220--Hb_011287_010 Hb_083799_010--Hb_002272_170 Hb_075315_010 Hb_075315_010 Hb_083799_010--Hb_075315_010 Hb_005081_020 Hb_005081_020 Hb_083799_010--Hb_005081_020 Hb_083799_010--Hb_007426_140 Hb_000260_660 Hb_000260_660 Hb_083799_010--Hb_000260_660 Hb_000251_040 Hb_000251_040 Hb_002272_170--Hb_000251_040 Hb_000692_160 Hb_000692_160 Hb_002272_170--Hb_000692_160 Hb_033772_070 Hb_033772_070 Hb_002272_170--Hb_033772_070 Hb_002272_170--Hb_007426_140 Hb_005489_140 Hb_005489_140 Hb_001726_110--Hb_005489_140 Hb_003038_140 Hb_003038_140 Hb_001726_110--Hb_003038_140 Hb_000144_120 Hb_000144_120 Hb_001726_110--Hb_000144_120 Hb_082741_010 Hb_082741_010 Hb_001726_110--Hb_082741_010 Hb_001019_050 Hb_001019_050 Hb_001726_110--Hb_001019_050 Hb_007441_280 Hb_007441_280 Hb_001726_110--Hb_007441_280 Hb_008790_020--Hb_005489_140 Hb_008790_020--Hb_001726_110 Hb_162150_010 Hb_162150_010 Hb_008790_020--Hb_162150_010 Hb_008790_020--Hb_001019_050 Hb_025336_020 Hb_025336_020 Hb_008790_020--Hb_025336_020 Hb_049436_010 Hb_049436_010 Hb_008790_020--Hb_049436_010 Hb_002836_100 Hb_002836_100 Hb_007426_140--Hb_002836_100 Hb_006829_100 Hb_006829_100 Hb_007426_140--Hb_006829_100 Hb_007426_140--Hb_075315_010 Hb_003849_240 Hb_003849_240 Hb_007426_140--Hb_003849_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.8405 47.1577 11.5717 30.6208 10.4838 15.2118
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.0919 7.71758 6.66545 62.3781 7.86344

CAGE analysis